Marinobacter similis: AU14_04250
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Entry
AU14_04250 CDS
T03594
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
msx
Marinobacter similis
Pathway
msx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AU14_04250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msx03019
]
AU14_04250
03016 Transfer RNA biogenesis [BR:
msx03016
]
AU14_04250
Enzymes [BR:
msx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AU14_04250
Messenger RNA biogenesis [BR:
msx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AU14_04250
Transfer RNA biogenesis [BR:
msx03016
]
Prokaryotic type
tRNA degradation factors
AU14_04250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH-I_KHDC4-BBP
KH_2
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
AHI28114
UniProt:
W5YGU6
LinkDB
All DBs
Position
888011..890125
Genome browser
AA seq
704 aa
AA seq
DB search
MKPVKKTFELGGKTVTLETGRIARQATGSVLVTIDDVSVLGTVVGAKEPKPGQGFFPLTV
NYTEKTYAVGKIPGGFFKREGRPSEKETLTSRLIDRPIRPLFPNGYMNEVQVVLTVMSAN
KSQDPDIAAMLAASAALSISGIPFDGPIGASRVAFTNERGYFLNPTYEELETSLLDMVVA
GTEDAVLMVESEAKGLTEDQMLGGVLFAHQEMQVAVSAIKEFAAEIGKPRWEWTPEVENT
ELLTAIKGEFAGAIEEAYSIRDKMERYARLGEIKTSAVEKFAGEEEGQPSGDEVKKYFGK
IEKSVVRQQVIDGKPRIDGRDNKTVRPIEIEVGVLPSTHGSALFTRGETQAIVTTTLGTA
RDMQIIDALHGERKDPFLFHYNFPPYSVGEAGRMGSPGRREIGHGRLAKRGISAVMPTIE
EFPYTIRAVSEITESNGSSSMASVCGSSLALMDAGVPLKAPVAGIAMGLVKEGDKFAVLT
DILGDEDHLGDMDFKVAGTKDGVTALQMDIKINGITDEIMELALEQAQEARLHILGEMNK
VIAESRSELSARAPSITTVKINPDKIRDVIGKGGATIRSICDETGASIDLDDDGNVKIYA
DNQEAAQAAVNRVKEITAEIEVGAIYKGRVERIVDFGAFVNLLPGKDGLVHISQISERRI
ENVTDELSEGQEVLVKVLDVDNRGRVKLSMKEVQEGEQPTDFSA
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
ctgaaacctgtaaagaaaacgtttgagctgggcggcaagaccgtcactctcgaaaccggt
cgtattgcccgtcaggctaccggttcagttctggtaactatcgacgacgtatccgtactg
ggtaccgtggtaggcgccaaggaaccgaagccgggccagggctttttcccgctgaccgtt
aactacactgaaaaaacctacgccgttggcaagatccccggtggtttcttcaagcgtgaa
ggccgtccttcagagaaggaaaccctgacctcccgcctgatcgaccgtccgattcgtccg
ctgttcccgaatggctacatgaacgaagtccaggttgtgctgaccgttatgtctgccaac
aagtctcaggatccggacattgccgcgatgctggctgcttctgcagctctgtcgatttcc
ggtattccgttcgacggcccgattggtgcatcccgtgttgccttcaccaatgagcgtggc
tacttcctgaacccgacctatgaagagctcgaaacctcgctgctcgacatggttgttgcc
ggtactgaagacgctgtgctgatggttgaatccgaagccaaaggcctgaccgaagaccag
atgcttggtggtgttctgtttgcccaccaggaaatgcaggttgcggtcagcgcgatcaag
gaattcgctgccgagattggcaagccgcgttgggagtggactccggaagtagaaaacacc
gagctgctgaccgccatcaagggcgaattcgctggcgccatcgaagaagcgtacagcatc
cgtgacaagatggagcgttatgctcgtctgggcgagatcaagacctctgccgttgagaag
tttgccggcgaagaggaaggccagccttccggtgatgaggtcaagaagtacttcggcaag
atcgagaagtcggttgtgcgtcagcaggtaattgatggcaagccgcgtatcgatggccgt
gacaacaagaccgttcgtccgatcgaaatcgaagtaggcgtgctgcctagcacccacggt
tcggctctgttcacccgtggtgaaactcaggccatcgtaaccactaccctgggcaccgct
cgtgacatgcagatcatcgatgccctgcacggtgagcgtaaggacccgttcctgttccac
tacaacttccctccgtactccgttggcgaagctggtcgtatgggcagcccgggccgtcgt
gaaatcggtcacggtcgtctggcgaagcgcggtatttccgcggttatgccgaccatcgaa
gagttcccgtacaccatccgtgcggtttccgagatcactgaatccaacggctccagctct
atggcgtcggtatgtggttccagcttggccctgatggacgcgggtgttccgctgaaggcg
ccggttgctggtatcgccatgggtctggtcaaggaaggcgacaagtttgcagtcctgact
gacatcctgggtgacgaagaccacctgggcgacatggacttcaaggttgccggtaccaaa
gacggtgttactgccctgcagatggacatcaagatcaacggtatcaccgacgagatcatg
gagctggccctggagcaggcacaagaagcacgtctgcacatcctgggtgagatgaacaag
gtaattgccgagtcccgttcagagctgtctgcacgtgcaccgagcatcaccaccgtcaag
atcaacccggacaagatccgtgacgttatcggtaagggcggtgctaccatccgttctatc
tgtgacgaaaccggtgcgtctatcgatctggacgacgacggcaacgtgaagatctacgct
gataaccaggaagctgcccaggcggcggttaaccgggtcaaggagatcaccgcggaaatc
gaagttggcgcgatctataagggtcgtgttgagcgcatcgttgatttcggtgccttcgtt
aacctcctgcctggaaaggatggtctggtgcacatttcccagatctctgagcgccgtatc
gagaacgtgactgacgagctgagcgaaggtcaggaagttctggttaaggttctggatgta
gataaccgtggtcgcgttaagctgtccatgaaggaagttcaggaaggcgagcagccgact
gacttctctgcctga
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