Marinobacter similis: AU14_08890
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Entry
AU14_08890 CDS
T03594
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
msx
Marinobacter similis
Pathway
msx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AU14_08890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msx03019
]
AU14_08890
03009 Ribosome biogenesis [BR:
msx03009
]
AU14_08890
Enzymes [BR:
msx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AU14_08890
Messenger RNA biogenesis [BR:
msx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AU14_08890
Ribosome biogenesis [BR:
msx03009
]
Prokaryotic type
rRNA helicases
AU14_08890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
ResIII
CMS1
AAA_19
Cas3-like_C_2
AAA_22
UTP25_NTPase-like
Motif
Other DBs
NCBI-ProteinID:
AHI28688
UniProt:
W5YQC6
LinkDB
All DBs
Position
complement(1858787..1860313)
Genome browser
AA seq
508 aa
AA seq
DB search
MSELSFAELGLDPAVLEAVTAVGYEKPSPIQAQSIPALLAGNHLLGVAQTGTGKTAAFAL
PLLSRIDASVTEPQILVLAPTRELAIQVAEAFTTYASKFRQFHVLPIYGGQDFYPQIKGL
RRGAQVIVGTPGRMLDHLRKGTLKLDSLKALVLDEADEMLRMGFIDDVEAILAKTPDNCQ
RALFSATMPPQIKKVAQTYLRNATEVKIESETRTVERISQFVLPVYAERKLDALTRILEV
EPIDAAIIFVRTKAETTMLAEKLSARGHAVAPLSGDLNQRQREQTVEDLKRGKKDIIIAT
DVAARGLDVSRITHVINYDVPYDTEAYIHRVGRTGRAGRTGKAILLVTPRERSWLKTLER
ATNSPMEAYELPSPTDLKKMREQQFESQLLGFAEDKKLAKAMSLLDEIAERNEMDMAMVA
GALACWMEAAQPGSLPLEQPEALPVVSATPPRRDRKGGRPGGFKNGPKGGFKKGGPKGRG
GPGGGPGGRGKPPGKGGKPAGKRPPRQA
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaattgtcctttgccgaactgggtctggacccggccgtacttgaagccgtgacc
gccgttggctatgaaaaaccgtcgcccattcaggcgcagtccatccccgccctactcgcc
ggaaaccatctactgggtgttgcccagactggtaccggtaaaactgcggcttttgccctg
ccgctgctgagtcgaatcgacgcgtccgttaccgagccccagattctggtgctggcacca
acgcgggagctggccattcaggtggctgaagcttttactacctatgccagcaagttccgc
cagttccacgttctgccaatttacggtggccaggacttttatcctcagatcaaaggcctg
cgtcgcggcgcccaggtcattgtcggcactcccggccggatgctggatcacctgcgcaag
ggcaccctgaaactggacagcctgaaggccctggttctggacgaagccgacgaaatgctg
cgcatgggtttcattgacgacgttgaggcaatcctcgccaaaacgccggataactgtcag
cgcgccttgttctcggccaccatgccgccgcagatcaagaaggttgcccagacttaccta
cgcaacgccacggaagtgaagatcgaaagcgaaacccgcaccgtcgagcgcatttcccag
ttcgttctgccggtttacgccgagcgtaaactggatgccctgacccgcatcctggaagtt
gagccgatcgatgccgccatcatcttcgtgcgcaccaaggctgagaccactatgctggcc
gagaagctgtcagcgcggggccatgccgtggcccccctgagtggcgacctgaaccagcgc
cagcgtgagcagaccgttgaagatctcaagcgcggcaagaaagacatcattatcgccacc
gatgtggcagcccgtggtctggacgtgtcccgaatcacccacgtcatcaactacgatgtg
ccctacgataccgaagcgtacatccatcgggttggccgtactggtcgtgccggtcgtacc
ggtaaggcgattctgctggtcactccgcgcgagcgcagctggctgaagactctggagcgc
gccaccaactcgccgatggaagcttacgagctgccctcgccgaccgatctcaagaagatg
cgcgagcagcagtttgagagtcagttgctaggctttgccgaagacaagaagctggccaag
gcgatgtctctgctggatgagattgccgagcgcaacgagatggatatggccatggtggct
ggtgcactggcatgctggatggaagccgctcagccgggttctctgccgctggagcaacca
gaagcgctgccggtagtctccgccactccgccccgtcgtgaccgcaagggtggtcgtcca
ggtggcttcaagaacggcccgaaaggcggcttcaagaagggtggcccgaaaggccgcggt
ggtcctggcggcggccccggcggtcgtggcaagcctcccggaaagggcggcaagcccgca
ggcaagcgcccgcctcgccaggcttaa
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