Marinobacter similis: AU14_13510
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Entry
AU14_13510 CDS
T03594
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
msx
Marinobacter similis
Pathway
msx03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AU14_13510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msx03400
]
AU14_13510
DNA repair and recombination proteins [BR:
msx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AU14_13510
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AU14_13510
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
AAA_29
nSTAND1
AAA_16
AAA_23
RsgA_GTPase
BCA_ABC_TP_C
DnaJ_CXXCXGXG
AAA_25
Viral_helicase1
cobW
AAA_21
Zn_ribbon_8
Motif
Other DBs
NCBI-ProteinID:
AHI29244
UniProt:
W5YK46
LinkDB
All DBs
Position
complement(2805862..2808684)
Genome browser
AA seq
940 aa
AA seq
DB search
MDHIQIKGARTHNLKNIDLDMPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSTY
ARQFLSMMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIYDYLRLLFARAGEPRC
PDHDQPLEAQTISQMVDQVLAMPEDSKLMILAPVIRDRKGEHQQVIDTMKSQGFIRLRVD
GTVYDIDDVPALDKKRKHQIDVVVDRFKVKPGLEQRLAESFETTLELADGIALVAPMTGE
GEEHTFSARYACTQCGYSLSELEPRIFSFNNPAGACPTCDGLGVKQFFDPEKIIQHPEAT
LAAGAIKGWDRRAVYYFQMLGSVADHYGMDLETPWIDLPTEFQEVLLNGSGAEDIPFRYV
NSRGHIMEKAHPFEGILPNLERRYRETESQSMREELARNLSTQPCKACHGSRLRRSARHV
FIEKRNLPEVTRLPVGEAHRYFEHLALPGRKGEIAEKILKEVRQRLQFLVNVGLEYLTLE
RSADTLSGGEAQRIRLASQIGAGLVGVMYILDEPSIGLHQRDNDRLLATLTHLRDLGNTV
IVVEHDEDAIRAADHVIDIGPGAGIHGGKIIAQGTPQQIIDHPDSLTGQYLNGTREIAVP
KTRNKGNGKSLTLTGATGNNLQDVTLNLPLGIMTCVTGVSGSGKSTLINSTLYPVSAAKL
NKATSLSHAPYRSLKGLDHLDKVIDIDQSPIGRTPRSNPATYTGLFTPIRELFAGTQEAR
SRGYKPGRFSFNVKGGRCEACQGDGVIKVEMHFLPDVYVSCDVCKGKRYNRETLEVRYKG
KNIHEVLDMTVEEGREFFDAVPFLARKLQTLMDVGLSYIRLGQSAVTLSGGEAQRVKLAK
ELSKRDTGQTLYILDEPTTGLHFYDIQQLLHVLERLRDHGNTIVVIEHNLDVIKTADWII
DLGPEGGSGGGQIIAEGTPEDVADNTASHTGKYLKSMLSK
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atggaccacatccagatcaaaggggcacgcacccacaacctgaagaatatcgacctcgat
atgcctcgggataaactgattgtggtcaccggcctgtccggctccggcaaatcgtccctg
gccttcgataccctttacgccgagggtcagcgccggtacgtggaatccctgtcgacctac
gcacgccaatttctgtcaatgatggaaaagcccgacgtcgaccacatcgagggcctgtcg
ccggcgatttccattgaacagaaatcgacatcgcacaacccccgctcaaccgtcggtacc
atcaccgaaatctacgattatctccgactgctgtttgcccgcgccggcgaaccccgctgc
ccggaccatgaccagccattggaagcccagaccatcagccagatggtggaccaggtgctg
gccatgccggaagacagcaagctgatgatcctggccccggtgattcgagatcgcaaaggc
gaacaccagcaggtcatcgataccatgaagagccagggttttatccgcctgcgggtcgac
ggcaccgtttacgatatcgacgacgttccggccctggacaagaagcgcaaacaccagatc
gacgttgtggttgatcggttcaaggtcaaacccggcctggaacagcggttggcagaaagt
ttcgagaccaccctggaactggccgatggcattgcactggtggcgcccatgactggcgaa
ggtgaagagcacaccttttcggcgcggtacgcgtgtacgcagtgcggctactccctcagc
gaactcgaaccacggatcttttcattcaataatcctgccggcgcctgccctacctgcgac
ggcctgggcgtgaagcagttctttgatccggaaaagatcatccaacaccccgaagccact
ctggccgccggtgccatcaagggctgggatcgccgggccgtttactacttccagatgctc
ggcagtgttgccgaccattacggcatggacctggaaacgccctggatcgacctgcccaca
gagttccaggaagttctgctgaacggctctggcgcagaggacatcccttttcggtacgtg
aactcccgtggccacatcatggagaaggcgcacccgtttgaaggcattctgcccaacctc
gagcgccgttaccgggaaaccgaatcccagagcatgcgagaagagctggcccgcaacctg
agcacccagccctgtaaggcctgccatggctcacggctgcgtcgcagtgcccgccacgtg
tttatcgaaaaacggaacctgcccgaggtaacccggctgccggttggcgaggcccatcgt
tactttgagcatctggccctgcccggccgcaagggtgagatcgcagaaaagatcctgaaa
gaagtgcgccagcgcctccagttcctggtcaatgttggcctggaatacctgaccctggag
cgcagtgccgataccctctcgggcggcgaggcccagcgcatccgtctggccagccagatt
ggtgccggcctggtcggtgtcatgtacattctcgacgaaccgtccatcggtctgcatcag
cgcgacaatgatcgcctgctcgccacgctgacccatctgcgggatctcggcaacacggtg
atcgtggtcgagcacgacgaagatgccattcgggcagccgatcacgtcattgatatcggc
cccggcgccggcatccacggcggcaaaatcatcgcccagggcacgccccaacagattatc
gaccatcccgactcgctgaccgggcaatacctgaatggtacccgtgagattgcggtgccc
aagacccgaaacaaaggcaacggcaaatcgctgaccttgaccggtgccacaggcaacaac
ctgcaggatgtcaccctgaacctgcccctgggcatcatgacctgcgtcaccggtgtctcc
ggctctggcaagtcgaccctgatcaacagcaccctgtatccggtctcggctgccaagttg
aacaaggccaccagcctaagccacgccccttaccgatcactcaagggcctggaccacctg
gacaaggtcattgatattgaccagagcccgataggccgcacaccgcgctccaacccggcc
acctacaccggactgttcacccccattcgcgaactgttcgccggtacccaggaggctcgt
tcacggggctataagcctgggcgcttctcgttcaacgtcaaagggggacggtgtgaggcc
tgccagggcgacggtgtcatcaaggttgagatgcacttcctgcccgatgtgtatgtgtcc
tgcgatgtctgcaaaggaaagcgctataaccgggaaaccctggaagtccggtacaagggc
aaaaacatccacgaagtcctggacatgacggtcgaggaaggccgggagtttttcgatgcg
gtgccatttctcgcccgcaaactccagaccctgatggatgtcggcctctcgtacattcgc
ctgggccagagcgccgtcaccctctccggcggggaagcccagcgcgtcaagctcgcgaaa
gagctgtccaaacgagacactggccagaccctgtacattctggacgaacctactaccggc
ctgcacttctatgacattcagcaattgctgcacgtcctcgaacgcctgcgcgaccacggc
aacaccatcgtggtgatcgagcacaacctggacgtcatcaagacggctgactggattatt
gacctggggccagagggcggctcaggcggcgggcagatcattgccgaagggacaccggaa
gacgtcgcggacaacactgcctcgcacaccggcaagtacctcaaatcgatgctgagtaag
taa
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