Marinobacter similis: AU14_15855
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Entry
AU14_15855 CDS
T03594
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
msx
Marinobacter similis
Pathway
msx03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
msx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AU14_15855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msx03400
]
AU14_15855
Enzymes [BR:
msx01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AU14_15855
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AU14_15855
DNA repair and recombination proteins [BR:
msx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AU14_15855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AHI29516
UniProt:
W5YKA9
LinkDB
All DBs
Position
complement(3308346..3309158)
Genome browser
AA seq
270 aa
AA seq
DB search
MPELPEVETTRRGIAPHCEGQRITQVTVRNASLRWPVPDDLAERLEGQTIRTVDRRAKYL
FLNLDGGTVIVHLGMSGSLRVISDQAPPMTHDHVELKLQSGVVLRFNDPRRFGCWLWSDA
ADSHPLIASLGPEPLSAEFNGGMLYRLSRSKKTPVKSFIMDNHVVVGVGNIYANEALFKA
GIHPRRQAGRISLDRYHLLAEAIRETLSAAILMGGTTLRDFVNSDGKPGYFAQSLLVYGR
TGAPCPECETTLKEIRMNNRSTVYCHRCQR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaattacccgaagttgaaaccacccggcgcggcatcgccccccattgtgaaggg
cagcgcatcacccaggtcacggtccgtaatgccagcctgcgctggccggtcccggacgac
ctcgccgaacgcctcgaaggtcagaccatccgcaccgtagatcggcgtgccaagtatctg
tttttgaacctggacggcggcacggtaattgttcacctgggcatgtccggcagcctgcgc
gtgatttccgaccaggccccgcctatgacccacgatcatgtcgagctgaagttacagagc
ggtgtcgtcctgcgctttaatgacccgcgacggtttggttgctggctgtggtcagacgcc
gccgacagtcatccgctaattgccagcctgggccccgaacccctgtcggcggagttcaac
gggggcatgctgtaccggctatcccgctccaaaaagaccccggtcaagtcgttcatcatg
gataaccacgtggtggtgggcgtgggcaacatctacgctaacgaggccctgttcaaggcc
ggtattcaccccagacggcaggccggtcggatcagcctggaccgctaccacctgctcgcc
gaagcgatccgggaaaccctcagcgcagccatcctgatgggcggaaccaccctgcgggac
tttgtaaatagcgatggcaaaccgggctatttcgcccagtcactgctggtgtacggacga
accggcgccccgtgccctgagtgcgagaccactttaaaggaaatccggatgaacaatcgt
tccactgtctattgccaccgctgtcagcgatag
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