Mycoplasmopsis synoviae 53: MS53_0484
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Entry
MS53_0484 CDS
T00261
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase beta chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
msy
Mycoplasmopsis synoviae 53
Pathway
msy03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
msy00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MS53_0484 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msy03021
]
MS53_0484 (rpoC)
03400 DNA repair and recombination proteins [BR:
msy03400
]
MS53_0484 (rpoC)
Enzymes [BR:
msy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MS53_0484 (rpoC)
Transcription machinery [BR:
msy03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MS53_0484 (rpoC)
DNA repair and recombination proteins [BR:
msy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MS53_0484 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF5617
Motif
Other DBs
NCBI-ProteinID:
AAZ43893
LNCC_Brazil:
MS0484
UniProt:
Q4A5S8
LinkDB
All DBs
Position
complement(563681..568159)
Genome browser
AA seq
1492 aa
AA seq
DB search
MSNTFSKNNVKKIKQISLSLATNEDVLSWSNGVVSKPETINYKTYKPEKDGLFDEIIFGP
VTDFKCPICFTKYKKSDENTICKRTTSCEKIQPKILPKISRRSRMGHIALNNPVVHFWFF
KINHSTISKLLGLKVAGSNKPVTKSDLEKIIYYKSHIVLETGGLKSLQKNTIIDINDAAD
IYAGALEEILEFNKDNKDGYEEILDTLNDLKEYAASKTGQDYGIDFYEYNEIIEEYSQAK
IGTGSKAIEYLLKNIDLEKESKEIQDEIDTINDQNKYEISSSEALKRNKLYKRLAIIKSF
LKSGQKPENLLIYNLPVIPADLRPLVQLDGGRHSTSDINELYRRIIIRNNRLEKWYESDA
PVLIKQNEFRMLQEAVDALIDNSRKKPGPVTSKDGHPFKSISDALVGKKGRFRQNLLGKR
VDYSGRSVIVVGPHLKMYQVGIPRDMAAKLFEPWIINRIMKEEEGINSVKAAKKLVDSLN
PIIWPYVEQVLENRPVLLNRAPTLHRLSIQAFQPVLIRGKAIKIHPLVTTAFNADFDGDQ
MAVHVPISKAAVREAQELMLASKNILGPKDGEPIINPSQDIILGLYYLTIEKANQKNEGK
FYPSFNEMMLAYENKYINLATRVVLPVSALKKISILQKTDAPYIYSTVGKFILNNAFPRD
FDFVFGKRVTEKLTSTNEHGEEVVSLKTKIDTSEHDIKRYVFNYGDNFTAKIKEADVNLP
LNKKEIAKIVRNIYEKYVPIVNIEDISQVINKIDKTQLDNLHELCSELKDFNGNKLEDNR
IHLELLVRLIKEEFLKIQDQYFAKDEESIFNHKYWELKHYTKLLERVWFRYSNYVSTVLD
VIKDLGFKFSTKSGITISMNDIVTSKTTKERIKKAEEETEALKDYFKKGYLTDDERYTLT
IKKWSDVKESIEKELKKVVDSNLDNPLFMMLSSGARGTYSNFTQLAGMRGLMNNNTKILK
ADAENDRVVRSIVEIPVKSSFLDGLTAYEFYSSTHGARKGLTDTALNTAKSGYLTRRLVE
VAQGVVIREEDCGSDYGFVVKDIKDTKTNTIIESLQERIEGRFTAVPIYDQNGKLIVKES
ELITPEIASEIVAKGITKVEIRSVLSCHTRNGLCKKCYGKDLATNRIVNIGEAVGVIAAQ
SIGEPGTQLTMRTFHTGGVAGGEDITGGFGRLIELIDAYDQPWGTPAEISRHYGKVKKIE
TQKNKKGKESGQFNISVEYFDEDGNKQTHQYLVKSSQRLRVKQGDEVVAGQKLSEGPIVL
NELLESVDTRAVQNYILKEVQKLYRLQGIAIADKYIEIIIRQMLSKISIIDPGDSSFYSG
SLVDAFVYQKENGILLSQGKKPAYGVVKIKGAKQTPLLSDSWLAAASYQETAKILVDASI
AKRTDNLEGLKENIIIGYKIPAGTNSNFEENGKYNLKEFSSYFPNKYDSTPELKLEEITD
ENIEEEFDYLKENTISEEEFENLDDDTMYHLETSDEFEDESFGEDDFEYSEE
NT seq
4479 nt
NT seq
+upstream
nt +downstream
nt
atgagtaatacattttcaaaaaataacgtaaaaaaaattaaacaaatttcattatcacta
gctactaatgaagatgttttatcatgatcaaatggtgttgtttcaaaacctgaaactata
aactataaaacctataaaccagaaaaagatggtctttttgatgaaataattttcggacca
gttactgattttaaatgtcctatttgctttacaaaatacaaaaaaagtgacgaaaataca
atttgtaaaagaactacatcttgtgaaaaaattcaaccaaaaattcttcctaaaatttca
agaagaagcaggatgggtcatattgcactaaataatcctgtagtgcacttttgattcttt
aaaattaaccactctactatttcaaaattattaggactcaaagtagccggaagcaataaa
ccagttaccaaaagtgatttagaaaaaattatttactataaatcacatatcgtgctagaa
accggtggattaaaatcactacaaaaaaataccataatcgatattaacgacgctgccgat
atttacgctggcgctttagaagaaattctagagttcaataaagataataaagatggctac
gaagaaattttagatacactaaatgatctaaaagaatatgccgcttcaaaaaccggtcaa
gactatggaattgacttctatgaatacaacgaaatcattgaagaatattctcaagcaaaa
ataggaaccggttctaaagctattgaatatttacttaaaaatattgatctagaaaaagaa
tctaaagaaattcaagatgaaatcgataccattaatgatcaaaataaatatgaaatttca
tcatctgaagctcttaaaagaaataagctttacaaacgtttagcaattattaaatcattt
ttaaaatcaggacaaaaacctgagaatcttttaatttacaatcttcctgttattccagca
gatttacgtcctttagttcaactagatggtggaagacactcaactagtgatatcaatgag
ttataccgtagaattattattagaaataaccgtcttgaaaaatgatacgaatcagatgct
cctgttttaattaagcaaaatgaattccgtatgcttcaagaagccgttgacgcactaatt
gataactcacgtaaaaaaccagggccagttacttcaaaagatggtcacccttttaaatct
atttcagatgctcttgttggtaaaaaaggtcgtttcagacaaaaccttttaggaaaacgt
gttgactattcaggtagaagtgttattgtggttgggcctcatttaaaaatgtatcaagtg
ggaattcctagagatatggccgctaagctttttgagccttgaattatcaatagaataatg
aaggaagaagaaggaattaattcagtgaaagctgctaaaaaattagtagactcacttaat
cctatcatttgaccttacgtagagcaagttttagaaaatcgtcctgttttactaaatcgt
gctcctacacttcataggctttctattcaagcctttcaacctgttttaattagaggaaaa
gctattaaaattcaccctctagttacaacagcttttaacgccgacttcgatggggaccaa
atggctgttcacgttcctatttctaaagccgccgttagagaagcgcaagaattaatgcta
gcttctaaaaatattttggggcctaaagatggagagcctattattaacccatctcaagat
attattttaggtctatattatttaacaattgaaaaagctaaccaaaaaaatgaaggtaaa
ttctatccttcatttaacgaaatgatgctagcttatgaaaacaaatacattaatttagca
actagagtagtgcttcctgttagcgctcttaaaaaaattagcattcttcaaaaaacagat
gctccttatatttattcaaccgttggtaaatttatattaaacaacgcctttcctagagat
tttgattttgtttttggaaaaagagttactgaaaaattaacaagcaccaacgagcatggc
gaagaagtagttagccttaaaactaaaatcgatacttctgagcatgacattaaaagatac
gtatttaactatggagataacttcacagctaaaattaaagaagcagatgttaatcttcca
ttaaataaaaaagaaatcgctaaaatcgttagaaacatttacgaaaaatacgttccgatt
gtaaatattgaagatatttcacaagtaattaataaaattgataaaactcagctagataat
cttcacgagctatgttctgagcttaaagactttaacggaaacaaactagaagataataga
attcatctagaacttcttgtgcgtttaattaaagaagaatttcttaaaatccaagatcaa
tattttgccaaagatgaagaatctatttttaatcacaaatattgagagttaaaacattac
acaaagcttttagaaagagtttgatttagatattcaaattatgtttctactgttttagat
gtaattaaagatttaggatttaaattctcaactaaatctggaattacaatttcaatgaat
gacattgtaacttcaaaaactactaaagaaagaattaaaaaagctgaagaagaaactgaa
gctttaaaagattacttcaaaaaaggatatctaaccgatgacgaaagatataccttaaca
attaaaaaatgatcagacgttaaagaatcaattgaaaaagaacttaaaaaagtagttgat
tctaacttagataacccgttatttatgatgctttcatcaggagctcgtggaacttattca
aacttcactcagctagctggtatgcgtggactgatgaataacaacaccaaaattcttaaa
gccgatgctgaaaacgatcgtgttgttagatcgatagttgaaattccagttaaatcatca
tttttagatggactaaccgcttatgaattctattcatcaacccacggggctagaaaaggg
ctaaccgataccgcgcttaataccgctaagtcaggatacttaacccgtcgtttagttgaa
gttgctcaaggtgttgtaatccgcgaagaagactgtggaagtgactatggttttgtagtt
aaagacattaaagacaccaaaactaacaccattatcgaatcacttcaagaaagaatcgaa
ggtagatttaccgcagttccaatttatgatcaaaatggaaaattaatagttaaagaaagc
gaattaataactccagaaatagctagtgaaattgtagctaaaggaattaccaaagtagaa
attagatctgttttatcatgtcatacaagaaatggattatgtaaaaaatgctacggtaaa
gatttagcaaccaatagaatagtaaatatcggagaagccgttggagttatagccgcgcaa
agtataggtgagcctggaactcagctaaccatgcgtaccttccataccggaggggttgca
ggtggagaagatataaccggtggatttggtcgtttaatcgaacttatcgatgcttatgac
caaccatgaggaactcctgctgaaatttcaagacactacggtaaagttaaaaagatcgaa
acccaaaagaataaaaaaggtaaagaaagcggtcaatttaacatttcagttgaatacttt
gatgaagatggaaacaaacaaactcatcaatacttagttaaatcaagtcaaagacttcgt
gtaaaacaaggtgatgaagttgttgctggacaaaaactttcagaaggacctatcgtgcta
aacgagctgcttgaatcagtagataccagagcggttcaaaactatattcttaaagaagtt
caaaaactataccgtcttcagggaattgcaattgccgataaatatattgaaattattatt
cgtcaaatgctttcaaaaatttcaataatcgatccaggagattcaagtttctactcagga
tctctagtggatgcttttgtataccaaaaagaaaatggaattctactttcacaaggtaaa
aaacctgcctatggtgtggtaaaaattaaaggagcaaaacaaactccgctactaagtgat
tcatgactagcggcagcatcataccaagaaactgcaaaaattttagttgatgcttctata
gcaaaaagaactgataatttagaaggactaaaagaaaatatcattattggatataaaatt
ccagccggaactaattccaatttcgaagaaaatggaaaatataaccttaaagaattttca
agttacttccctaataaatacgattcaactccagagctaaaactagaagaaatcaccgat
gaaaacatcgaagaagaattcgattatttaaaagaaaacactatctcagaagaagaattc
gaaaacctagatgacgatactatgtatcacttagaaactagtgatgaattcgaagatgaa
tcttttggtgaagatgactttgaatacagcgaagaataa
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