Malus sylvestris (European crab apple): 126581841
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Entry
126581841 CDS
T09027
Name
(RefSeq) transcription initiation factor TFIID subunit 6-like
KO
K03131
transcription initiation factor TFIID subunit 6
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
126581841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126581841
03036 Chromosome and associated proteins [BR:
msyl03036
]
126581841
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
126581841
Coactivators
SAGA/TFTC/STAGA complex
126581841
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
126581841
STAGA complex
126581841
TFTC complex
126581841
SAGA complex
126581841
SLIK complex
126581841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF6_C
TAF
Histone
TFIID-31kDa
CBFD_NFYB_HMF
Herpes_U34
Motif
Other DBs
NCBI-GeneID:
126581841
NCBI-ProteinID:
XP_050101728
LinkDB
All DBs
Position
9:8839898..8845421
Genome browser
AA seq
546 aa
AA seq
DB search
MSIVPKENVEVIAQSIGINNLSPDAALALAPDVEYRLREIMQEAIKCMRHSRRTRLTADD
VDGALNIRNVEPIYGYVSGGPLRFKRAIGHRDLYYIDEKDVDFKDVIEAPLPKAPLDTGI
VCHWLAIEGVQPAIPENAPLEVLAPTSDGKSYEQKGDGLPVDIKLPVKHVLSRELQLYFD
KITELVVSRSDLVLFKEALVSLATDSGLHPLVPYFTCFIADEVARGLNDYALLFALMRVV
QSLLQNPHIHIEPYLHQLMPSVVTCLVAKRLGNRFADNHWELRDFTATLVASICKRFGHV
YNTLQSRLTKTLVNAFLDPKRTLTQHYGAIQGLAALGPNVVRLLVLPNLESYLRLLEPEL
LLDKQKNEMKRHEAWRVYGALLNAAGQCIYDRLKMFPLLPSPAPQSYWKTKGRLHITLPN
KRKQSAEHMEEQPPLKKITTDGPTDLSPTTSSPSHMEVDTATPAPASAGDTDAGPSSSSH
KMPNESIPHITSRMGKPVDLSLKKSALLTHVWKDDLNSGHLLVSLFELFGENILSFVPAP
EMCLFL
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgagcattgtgcccaaagagaatgttgaagtaattgcacagagcataggaatcaacaac
ttgtctccagatgctgctcttgctctcgcccccgatgtcgaataccgcctccgtgagatc
atgcaggaggcgattaaatgcatgcgtcactcgaggagaactagattgacagctgacgac
gttgatggtgcactcaacataagaaatgtagagccaatctatggttatgtttctggaggt
cctttgcggttcaaaagagctattgggcacagggatttgtattacattgacgaaaaggat
gtggattttaaagatgtgattgaagctcctttaccaaaagcaccgcttgatactggaatt
gtttgtcactggcttgctatagaaggcgtacaacctgcaattccagaaaatgctcctcta
gaagtactcgcacctacttctgatggtaaaagttatgaacaaaagggtgatggacttcct
gttgacattaaattacctgttaagcatgtattatctagggagcttcagttatattttgac
aaaatcactgagcttgttgtgagtaggtctgatttagttttgtttaaagaggcattagtg
agtttggccactgattcgggacttcatccattagttccttatttcacatgctttattgct
gacgaggttgctcgtggcttgaatgattatgcacttctattcgctttgatgcgagttgtt
cagagtcttctccagaatcctcacatacacatagaaccttatctgcaccaattgatgcca
tctgtggtcacttgccttgttgcaaaaaggttaggcaacaggtttgctgacaatcattgg
gaacttagagacttcactgcaacactggttgcttcaatctgcaaaaggtttgggcatgta
tataacactctccagtcgcgtcttacgaaaactttggtcaatgcatttttggacccaaag
cggacattgactcaacactatggtgcaattcaaggtttagctgctctggggcccaatgtg
gttcgccttcttgtactgccaaatctggagtcatatctgcgacttcttgaaccagagctt
cttcttgacaagcaaaagaatgagatgaagcggcatgaagcatggcgtgtgtatggagcc
ttgttgaatgcagcaggtcaatgcatatatgacaggctcaagatgttcccacttttgcca
tctccagcgccgcaatcttactggaagaccaaggggagactccatattactctgccaaat
aagcgcaagcaaagtgcggagcacatggaagagcaaccacccctgaagaaaattacaact
gatgggccaacggatttgtcaccaactacttcttcaccatctcacatggaagtagacaca
gcaactccagctccagcttcagcaggggatactgatgcaggcccctcgtcgtcttctcat
aagatgccgaatgagagcattccacacataacaagtagaatgggcaagcctgttgatctg
tctctaaagaaatcagctctcctcactcatgtttggaaggatgacttgaattctgggcat
ctcctggtttcattgtttgagttgttcggtgaaaacatcctctccttcgttccagctccc
gagatgtgtttatttttgtaa
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