Malus sylvestris (European crab apple): 126581939
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Entry
126581939 CDS
T09027
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126581939
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126581939
03009 Ribosome biogenesis [BR:
msyl03009
]
126581939
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126581939
Spliceosome [BR:
msyl03041
]
Complex A
U2 snRNP components
U2 related factors
126581939
Complex B
126581939
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
126581939
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
90S particles
Helicases
126581939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
ResIII
SRP54
T2SSE
nSTAND3
AAA_7
ABC_tran
Flavi_DEAD
AAA_30
AAA_16
TniB
Motif
Other DBs
NCBI-GeneID:
126581939
NCBI-ProteinID:
XP_050101839
LinkDB
All DBs
Position
9:34208912..34213440
Genome browser
AA seq
730 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSISLAKMSKSNGGGGAAANQNAVSSIINRWTGKPYSQRYYEI
LEKRKTLPVWHQKEEFLQALKASQSLILVGETGSGKTTQIPQFVLEAVDSESSDKRKKMM
VACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSSRTVLKYLTDGMLLREAMT
DPLLERYSVIILDEAHERTLATDVLFGLLKEVLRNRPDLKVVVMSATLEAEKFQGYFSGA
PLMKVPGRLHPVEIFYTEEPERDYLEAAIRTVVQIHMYETPGDILVFLTGEEEIEDACRK
INKEIGNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPPPVKEGGIPGRKIVVSTNIAETS
LTIDGIVYVIDPGFAKQIVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE
KSFQNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLG
ALDDDGNLTKLGEIMSEFPLDPQMSKMLVVSPEFSCSNEILSISAMLSVPNCFVRPREAQ
KAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKSADNVRQQLVRI
MGRFNLKLCSTEFNSRDYYINIRKAMLAGYFMQVAHLEHTGHYLTVKDNQVVHLHPSNCL
DHKPEWVIYNEYVLTSRNFIRTVMDIRGEWLIDIAPHYYDLANFPQCEAKRVLEKLYRKR
EDKDENKNRR
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtgagcttgttcgacgtggtggacgagacctccatc
tcattggcgaagatgagcaaatcgaacggcggcggcggagctgctgccaaccaaaacgct
gtgagcagtatcatcaatcggtggacgggaaagccgtactcgcagaggtactatgagatt
cttgagaagaggaagacgttgccggtttggcaccagaaagaggagttcttgcaggctctc
aaagccagccagtctctcattttggttggtgagactggtagtggtaaaaccacgcagatt
ccccaatttgttttggaagctgtcgattcagaatcttcagataaacgcaaaaagatgatg
gttgcatgtacccaaccccgtagagtggctgcaatgtcagtatcccgtcgtgttgctgaa
gagatggatgtaaccattggagaagaggtcggttatagcatccgttttgaagactgcagc
agttccagaactgtgttgaagtatctaactgatggaatgcttttaagagaagcaatgact
gatccactattagaaagatacagcgtgataattcttgatgaagctcacgaaagaacttta
gcaacagatgttctatttgggctgttgaaggaagtgttgagaaacagacctgacttgaag
gtggtggtgatgagtgctacacttgaagctgaaaagtttcagggctatttcagcggtgca
ccactcatgaaagttcctggaaggcttcatccagtggaaattttttacactgaggaacct
gaaagggattatctggaagcagcgattcgaacggttgtgcagattcatatgtatgagacc
ccaggagatatacttgtttttctaacaggagaggaggagatagaagatgcatgccgcaaa
attaacaaggaaattggaaatctgggtgaccaggttggtcctgtgaaagtggtgcctctg
tattcaactctacctccagctatgcagcagaaaatatttgatcctgctcctcctcctgta
aaagaaggtggaattcctggaaggaagattgtggtgtccacaaacattgcagaaacttct
ctgactattgatggaattgtttatgttattgatcctggatttgctaaacaaatagtctat
aacccaagagtgcgtgttgaatcattgttggtatctccaatttccaaggcaagtgcacat
cagaggtcaggtcgtgctggaagaactcaaccaggaaaatgtttcagactttatactgag
aaaagtttccagaatgatcttcaaccacaaacttatcctgaaatattgagatccaacctt
gcaaatacagttcttactttgaagaaattaggaatagatgatctggttcattttgatttt
atggatccccctgctcccgagacactgatgagagcactagaggtcttgaattatttggga
gcattggatgatgatggtaacttgaccaagctgggggagattatgagtgagttcccattg
gatcctcagatgtcaaagatgcttgtagtcagccctgagttcagctgctcaaatgaaatt
ttgtcaatatctgccatgctttcagtacccaattgctttgtccggcctagggaggctcaa
aaagctgctgatgaagcaaaagctaggttcgggcacattgatggagatcatctcacgctt
ctgaacgtgtatcatgcatacaagcaaaataatgaggatccgtcatggtgctatgagaac
tttgtcaatcagagggcattgaagtccgcagacaatgtcaggcagcagctagtgcgcatt
atgggccgatttaacctcaagctgtgcagtactgaattcaatagtcgtgactactacatc
aacataagaaaggccatgctagctggatatttcatgcaggtggctcacctggaacacact
ggccactatctgacagtgaaagataaccaagtggtgcatttgcatccgtcgaattgcttg
gatcacaagccagaatgggtgatttacaatgagtatgttttgacaagcaggaattttatc
cgtacagtgatggatattcgtggggagtggctaatcgatatagcaccccactactatgat
ttggcgaattttcctcagtgtgaggccaagcgtgttcttgagaagctatacaggaagcgg
gaggacaaggatgagaacaaaaacagaagatga
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