Malus sylvestris (European crab apple): 126581995
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Entry
126581995 CDS
T09027
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126581995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126581995
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126581995
mRNA degradation factors
5'-3' decay
Decapping complex
126581995
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Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
126581995
NCBI-ProteinID:
XP_050101914
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Position
9:complement(10431543..10437413)
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AA seq
804 aa
AA seq
DB search
MERSNGTDFRDLLESSSSENKLFDASQYEFFGQNVVDEVELGGLDHEEGRKPLFGPADNE
YHLFEKDEALGMGSLSDIDDLASTFAKLNKVVTGPRHPGVIGDRGSGSFSRESSSATDWA
QDGDFNNWLDQHMFDTEFSQEGKRWSSQPQPSSARFSESKQPKPLYRTSSYPDQQPVQHH
FSSEPVVPPKSAFTSFPPPGNKSPQGSPHQLNLSALAGGSQLPFSAPNLSPLSNSNLHMA
GLPHGLHYGGNMPQFANPSLPFNSRSQSHWVTHAGVLHGDHSSLRNNMLQQQLPHQNGLL
SPQLLSAQQQLQQQRLHHSVQPSLAHFAAMQSQFYGTHPSSSHKSMHGLSDTSNHRPKRG
KHRFSQGSDTGSQKSESGWIQFRSKHMTSEEIESILKMQHAATHSNDPYIDDYYHQASLS
KKEAGSRSKHPFCPSHLREFSSRGRNSTDQHTHSSVDALGRIPLASIRRPRPLLEVDPPP
GSGDGEQVSEKPLEQEPMLAARIAVEDGLCLLLDVDDIDRLLQHGQPQDGGVQLRRRRQI
LLEGLAASLQLVDPLGKGSHSAGLAPKDDIVFLRLVSLPKGRKLLSKFIQLLFPGSELAR
IVCMTVFRHLRFLYGGLPSDPGAAETTSNLAKRVSTCVNGMDLRALSACLVAVVCSSEQP
PLRPLGSPAGDGATIILKSVLERATVLLSDPHAAGSCSISNRALWQASFDEFFGLLTKYC
LSKYETIVQSIFTQSQQSTEAIGSEATKAIHREMPVELLRASLPHTDERQRKLLSDFAHR
SMPISGLNGHGGNGGQMNSESVRG
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggagagatctaatggcacagatttcagggacttgcttgagagttcctcgtcggagaat
aaactctttgatgcatcacaatatgaatttttcggtcaaaatgtggtggacgaagttgag
ttggggggtttggaccacgaggaaggcagaaaacctttgttcgggcctgctgataatgag
taccatttatttgagaaggatgaggctcttggtatgggatctttatctgacatagatgac
ctggcaagcacttttgcaaagttaaacaaagttgtaacaggaccaagacatccaggtgtt
attggagacagaggttcagggtctttttcacgagaaagttcatcagctactgattgggcc
caagacggagatttcaataactggttagatcagcatatgtttgatacagaattttcccag
gaaggaaagaggtggtcgtcacagccgcaaccttcttctgctcgattttcagaatcaaaa
cagccaaaacctttgtacagaacatcgtcttacccagaccagcagccagtccagcatcac
ttctccagtgaaccagttgtaccgcccaagtcagcattcacatcattccctcctcctgga
aacaagtccccgcagggctcaccacatcagctgaatctttctgctcttgcgggtggttcc
cagttacctttttctgcaccaaacctttctcctttatctaactctaatcttcatatggcc
ggtttacctcatgggttgcattatggagggaacatgcctcagtttgccaaccctagcctt
cctttcaatagcaggtcacagagtcattgggttactcatgctggagtattgcacggcgat
cattccagcctcagaaacaatatgttgcagcaacagctccctcatcaaaatggacttctt
tccccacaattattgtcagcacagcagcagctacaacagcagagattgcaccattcggtt
cagccatctttggcccattttgctgcaatgcagtctcaattttatggtactcacccttct
tcatcccataagtcaatgcatgggttgtcggacacaagtaatcatagaccgaaaagagga
aaacatcgtttttctcaaggctctgatactggtagtcagaaaagtgagagtgggtggatc
cagttcaggtctaagcacatgacatctgaagagatagagagtattcttaaaatgcagcat
gccgcaacacacagcaatgacccctatattgatgattattaccaccaggcaagtctttcc
aaaaaagaagctggctcgcggtcaaaacatcctttttgcccatctcatcttagagagttc
tcttcccgcggccgtaatagtactgatcagcatactcatagttctgtcgacgctcttggg
agaattccccttgcttccatacgtaggcctcgccccctccttgaagttgaccctccccct
ggttctggtgatggcgagcaggtctctgagaagcctctggagcaggaaccaatgcttgct
gctagaattgccgttgaggatggcctttgtctccttcttgatgttgatgatattgatcga
ctgctacagcatggtcagccccaagatggtggggttcaactcaggcgaaggcggcaaata
ctgctggagggtttggctgcatcacttcagcttgttgacccacttggtaaaggcagccac
tcagcggggctggctccaaaggatgacattgtgttcctacgtttagtttctcttcctaag
gggcgaaagctcctttctaagtttattcagcttctcttccctggtagcgagcttgcccgt
attgtgtgtatgacagtattccgtcatttaaggtttttgtacggtggcctaccctctgat
cctggagctgctgagacaactagtaatcttgcaaagagagtttctacatgtgtaaatggt
atggatcttcgtgcgttaagtgcttgtcttgttgcagtagtttgttcatcagagcagccg
ccgctccgaccccttggaagccctgctggagatggggccactattatcctaaaatctgtt
cttgaaagggcaactgtactcttaagcgaccctcacgctgctgggagctgtagcatttct
aaccgtgccctttggcaggcatcctttgatgaatttttcggtcttctcactaagtattgc
ctgagcaagtatgaaacaatagtacaatcaatatttacgcagagtcagcaaagcacagaa
gctattggttcagaggccaccaaggcgatacatcgtgaaatgcctgtggagcttctgcgt
gctagtcttcctcacacagatgagcgtcaacggaagcttttgtctgattttgctcatcga
tcaatgcccatttctggtcttaatggccatggcgggaacggaggtcaaatgaactctgaa
tctgtgaggggatag
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