Malus sylvestris (European crab apple): 126582035
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Entry
126582035 CDS
T09027
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126582035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126582035
Spliceosome [BR:
msyl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
126582035
Complex C
U5 SnRNP specific factors
126582035
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
126582035
NCBI-ProteinID:
XP_050101962
LinkDB
All DBs
Position
9:22008781..22019453
Genome browser
AA seq
2347 aa
AA seq
DB search
MWNNGQIAPPGTGGSSIPPPPAAQPSYTVLPSPADAEAKLEEKARKWQQLNSKRYSDKRK
FGFVESQKEDMPPEHVRKIIRDHGDMSSKKFRHDKRVYLGALKFVPHAVYKLLENMPMPW
EQVRDVKVLYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDRRHFKRMRFPPFD
DEEPPLDYADNLLDVDPLEPIQLELDEEEDSAVYTWFYDHKPLVKTKLINGPSYRKWHLS
LPIMATLHRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKGDE
DWNEFNDINKLIIRSPLRTEYRIAFPHLYNNRPRKVKLCVYHTPMVMYIKAEDPDLPAFY
YDPLIHPIPSTNKERREKKTSDEEEDDIFTLPDAVEPFLKDTQLYTDTTAAGISLLFAPR
PFNMRSGRTRRAEDIPLVSEWYKEHCPPSYPVKVRVSYQKLLKCFVLNELHHRPPKAQKK
KHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKT
LTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYTFSHVGQLT
GMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVPLLE
RWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKARTI
LQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGATVDK
TVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFTPIPFPP
LSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLLTQR
AFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWIKPADSEPPP
LLVYKWCQGINNLQSIWDTSEGQCVVMLQTKFEKFFEKIDLTMLNRLLRLVLDHNIADYV
TAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLTRASEIAGPPQMPN
EFITYWDTKVETRHPIRLYSRYIDRVHILFRFTHEEARDLIQRYLTEHPDPNNENMVGYN
NKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVSVYSKDNPNFLFSM
SGFEVRILPKIRMSQEAFSNTRDGVWNLQNEQTKERTAVAFLRVDDEHMKVFENRVRQIL
MSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNSKMP
SRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSQQTDVGVTHFRSGMSHEEDQLIPNL
YRYIQPWESEFIDSQRVWAEYALKRQEAQAQNRRLTLEDLEDSWDRGIPRINTLFQKDRH
TLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGILEHT
LFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVY
VGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQVLDQELDALEIET
VQKETIHPRKSYKMNSSCADILLFAAHRWPMSKPSLVAEPKDVFDQKVSNKYWIDVQLRW
GDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPLLQQ
AMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNVYRV
TIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEVAAL
VRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDLILK
ATEPQMVLFNIYDDWLKSISSYTAFSRLILILRALHVNNEKAKMLLKPDKTVVTEPHHIW
PSLSDDQWMKVEVALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEITPPSQQRQQIAE
IEKQAKEASQLTAVTTRTTNVHGDELIVTTTSPYEQSAFGSKTDWRVRAISATNLYLRVN
HIYVNSEDIKETGYTYIMPKNILKKFICIADLRTQIAGYLYGISPPDNPQVKEIRCIAMP
PQWGTHQQVHLPSALPDHDFLNDLEPLGWMHTQPNELPQLSPQDLTSHAKILENTKQWDG
EKCIILTCSFTPGSCSLTAYKLTPSGYEWGRVNKDTGSNPHGYLPTHYEKVQMLLSDRFL
GFYMIPDTGPWNYNFMGVKHTPSMKYGIKLGTPREYYHEDHRPTHYLEFSNLEEGDTVEG
DRDDTFT
NT seq
7044 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacaacggccagattgcgccgcctggcaccggcggttcgtcgattccgccaccg
ccggcggctcagccatcttacacggtattgccttctccagctgatgccgaggccaagctt
gaggagaaggcccggaaatggcagcaactaaattccaagcggtatagcgataagcgcaag
ttcgggttcgtcgagtcgcagaaggaggatatgcctcctgaacatgtcaggaagatcatt
agagaccatggggacatgtcctcaaagaaatttcgtcatgataaacgagtgtatctcgga
gcacttaagtttgtcccccatgcagtttacaagctcctcgagaatatgccaatgccatgg
gagcaggtccgggatgtgaaggttttgtaccatataactggggcaattacatttgtaaat
gaaataccatgggttgttgaacccatctatttggctcagtggggtacaatgtggattatg
atgagaagggagaagagggatcgtcggcatttcaaaagaatgcggtttccaccatttgat
gacgaggaacctccattagactatgctgataatctgttagatgttgatcctctagagcca
attcaattggagttggatgaagaagaagattctgctgtgtatacatggttttatgaccat
aaacctcttgtcaaaacaaagctcataaacggtccaagttataggaagtggcatctgtca
cttccgatcatggcaactcttcatcgactagcaggacagctgctttctgatcttattgac
cgcaattatttctacctgttcgacatggagtctttttttacagccaaagcactcaacatg
tgcattccaggtggacccaaatttgaaccattgtatcgggatatggagaaaggggatgag
gactggaatgagtttaatgacatcaacaaactcattattcggtcacctcttagaacagag
tacagaattgcattccctcatctctacaacaatagaccaaggaaggtcaagctctgtgtt
tatcacacacccatggtgatgtacataaaggccgaggatcctgatctacctgcgttttat
tatgatccattgatacacccaatacccagcactaacaaggagcggcgtgagaagaaaact
tctgatgaggaggaagatgatatctttacgttgccggatgctgtggaaccttttctgaaa
gatactcagctttatactgacacaacagctgccggaatctcccttttgtttgccccgcgc
ccttttaacatgagatctggtcggacccgtcgtgcagaagatataccccttgtgtccgag
tggtataaggaacattgtcctccttcatatccagttaaagttcgagtcagctatcagaag
ttgctgaaatgttttgtattgaacgagctgcatcacagaccacccaaagctcaaaagaag
aaacatttgtttcgatctctccaagctaccaagtttttccaaactacagaacttgattgg
gctgaagccggtcttcaagtctgtaagcagggttataacatgctgaatctcttgatccac
aggaaaaatttgaattaccttcaccttgattacaattttaatctgaagcctgtgaagacc
ttgacaacaaaggagcgtaagaaatctaggtttggtaatgcttttcatctgtgccgtgaa
atcttgcggttgacaaagcttgtagttgatgccaatatccagttccgtttgggtaatgtt
gatgcctttcaattggctgatggcttacaatatacattttctcatgttggtcagttgact
ggaatgtaccgttacaagtacaggttgatgaggcagattagaatgtgcaaagatttgaag
cacttgatttactaccggttcaatactgggccagtgggaaaaggaccaggatgtgggttc
tgggcaccaatgtggagggtgtggttgtttttccttcgtggcatagttcctcttctggaa
cggtggctggggaatttactagcacgtcaatttgaggggcgacattcaaaaggagtggcg
aagactgttactaagcagcgtgttgaaagccattttgacttggagcttcgagctgctgtg
atgcatgatgttcttgatgccatgcctgagggtatcaagcaaaataaggccagaactatc
ttgcaacatctcagtgaggcatggcgttgctggaaagcaaacattccttggaaggttcct
ggtttgccagttcccattgaaaatatgattcttcgttatgtcaaatcaaaggcagactgg
tggacaaatgttgctcattataatcgtgaacgtataagaagaggtgctactgttgataag
acagtttgtcgaaagaatcttggaagattaactcgtctctggctaaaggcggagcaggaa
cgacagcataattatttgaaagatggtccgtatgttacaccagaagaggcagttgcaatt
tacacgacaaccgtgcactggttggagtcaaggaagtttacacccattccgttccctcca
ttgtcgtacaagcatgataccaagcttctgatccttgctctggagaggttgaaggagtct
tatagtgtggctgtaagattgaaccagcttcaaagagaagagttgggtctcattgaacaa
gcttatgataatcctcatgaggcattgtcacgaattaagcgtcacttgctcactcagcgt
gcattcaaagaagttggcatagagttcatggacttgtatagctatctgattccagtttat
gagatagaacctcttgagaagattacagatgcatatcttgatcaatatttatggtatgag
ggtgacaaacgtcatctctttcccaactggatcaagcctgcagattcagagccacctcca
ctcttggtttataagtggtgtcagggaatcaataatttgcagagcatatgggatacaagt
gaggggcaatgtgtggtgatgcttcaaacaaagtttgagaagttctttgagaagatcgac
ttgacaatgctaaataggctcctgcggcttgttcttgaccataatattgctgattatgtc
actgcaaagaacaatgtggtgttgtcctacaaagatatgagtcatacaaattcgtatggt
ctcatacgtggtcttcagtttgcatcttttgtagtacaatattatgggcttgtgttggat
ctgttacttcttgggctgactcgggccagtgagattgccggtccaccccagatgccaaat
gagttcatcacttattgggatacaaaggttgagactcggcatcctatcaggctgtattct
agatacatagacagggtgcatatcttgttccgcttcacccacgaggaggctcgggacctt
attcagcgatatcttactgagcatccagaccccaataatgaaaatatggttggatataat
aataagaaatgctggccaagagatgctagaatgaggcttatgaaacatgatgtcaatctt
gggaggagtgttttttgggatatgaagaaccgtctccctcgaagcatcacaactttggag
tgggagaacagctttgtgtctgtttacagcaaggataatccaaattttcttttcagtatg
tctggatttgaagttcggatacttccgaagataagaatgagtcaagaagcatttagtaac
acgagggatggggtttggaatttgcagaatgagcagacaaaggagaggactgctgttgct
ttcttacgtgttgatgatgaacacatgaaggtgtttgagaatcgtgtgaggcagattctt
atgtcttcagggtctacaacgtttacaaaaatcgttaacaaatggaatacagcgcttatt
ggtctaatgacttacttccgtgaagcaactgttcatacacaagaactgttggatttgctc
gtcaaatgtgaaaacaaaattcagacccgtattaagattgggttgaattcaaagatgcct
agcaggtttccacctgtcatattttacacaccaaaagaaattggaggacttggcatgtta
tctatgggtcacatattgattccacaaagtgacctccgttacagtcagcagacagatgtt
ggtgtgactcattttaggagtggaatgagtcatgaagaggaccagctaatcccaaatctt
taccgttacatacagccatgggagagtgaatttatagattctcaacgtgtttgggcagaa
tatgcactgaaaaggcaggaagctcaggcacaaaataggcgtctgactcttgaagatttg
gaagattcatgggataggggaataccacgcataaatactttgttccagaaggaccggcat
actttagcatatgacaaaggatggagagttcgcacagattttaagcagtaccaggtgttg
aaacaaaatcctttctggtggacacaccagaggcatgatggaaagttatggaacttaaac
aactaccgaactgatgtgattcaagcccttggaggtgttgaaggaatccttgagcataca
ttattcaagggaacatactttcctacatgggaggggctcttctgggagaaggcatctggt
tttgaggagtcgatgaagtataaaaagttgaccaatgcacagagatctgggctcaatcaa
atccctaatcgtagatttactctttggtggtcacctaccataaatcgggccaacgtatat
gttggtttccaagtgcagctagatttaactggaatatttatgcacgggaagattccaacc
ttgaagatatcactgattcagatattccgtgctcacttgtggcagaagattcatgaaagt
gttgtcatggatctctgtcaggttttggatcaagagttggatgctttggaaattgaaact
gtgcagaaagaaacgatacatcccaggaagagttacaaaatgaacagctcttgtgctgac
attcttctgtttgctgcccatcgatggccaatgtcaaaacctagtcttgtagctgagccc
aaggatgtctttgaccagaaagtgagcaataagtactggatagatgtacaactgcgttgg
ggagattatgattctcatgatattgagcgttacacccgagctaagtttatggactatacc
actgacaacatgtccatctatccttctcccacaggggtgatgattggtcttgatttggcc
tataatttgcattctgcatttggtaactggtttcctggttcaaaacccctgcttcaacag
gcaatgaacaagatcatgaaatcaaatccagccttatatgtcctgagggagcgaataagg
aaaggattgcagctatattcttctgagcctacagagccatatttatcatcccaaaactat
ggggagatcttcagcaatcaaattatttggtttgttgatgacaccaatgtgtatcgtgtt
acaatccataagacatttgaaggaaatctcactacaaaaccaatcaatggtgctatcttc
atattcaatccaaggacggggcagctattcctgaaggttatccacactagtgtctgggca
ggacagaagcgtcttggtcagttggcaaagtggaaaactgcagaagaagttgctgcactt
gtgcgttctttgccagtggaagaacaaccaaagcaaattattgtgactcgtaagggaatg
ttggatcccttagaggttcatttgctcgatttccccaacatagtcataaaaggaagtgag
ctgcagcttcctttccaagcttgtttgaagattgagaaatttggtgatctgatattgaag
gctactgaaccgcagatggttcttttcaatatttatgatgattggttgaagagtatttca
tcatacactgcattttctcggctaattttgattcttcgtgctcttcatgtgaacaatgag
aaggcaaagatgttattgaagcctgataaaacagtcgttactgagccacatcacatctgg
ccttctctttctgatgatcaatggatgaaggttgaggttgctcttagggatctcatattg
tcagactacgcaaaaaagaacaatgtgaatacatcagccctaacacaatctgagatccgt
gacattatacttggagctgagatcaccccaccttcgcaacagaggcagcaaattgcagaa
atagaaaaacaggccaaagaagccagccagctgacagcagtcacaacaaggactacaaat
gtgcatggtgatgaactcattgtcaccactacgagtccctatgagcaaagtgcatttggc
tccaaaactgattggcgtgtgagagcaatatcagctacaaatctatatctccgtgtcaat
catatatatgtgaattcagaagatattaaggaaacgggttacacctatattatgccaaag
aacattttgaaaaagttcatctgcattgcggatctgaggacgcaaatagctggttacttg
tatggcataagcccacccgataaccctcaggtcaaggaaatccgctgcattgcaatgcct
ccacaatgggggacccaccagcaagttcatcttccatccgctcttcctgatcatgatttc
ctcaacgatttggagcctttgggatggatgcacacacagccgaatgagcttcctcagctt
tctcctcaggatctcacttctcatgctaagattttagagaacactaagcaatgggacggg
gagaaatgcatcattttaacctgcagtttcactccaggttcctgctctttaactgcatac
aagcttactccatctggttatgaatggggacgtgtcaataaagacacaggaagcaatcct
cacggataccttcccactcattacgagaaggtgcagatgcttctcagtgaccgcttcctt
ggtttctatatgattccggacactggtccatggaactacaacttcatgggggtgaagcat
acgccgagcatgaagtatggcatcaagcttggaacacccagggagtactatcatgaggac
caccggccgacccattaccttgagttcagcaatcttgaggagggtgatacagtggaagga
gatcgcgatgatactttcacataa
DBGET
integrated database retrieval system
