Malus sylvestris (European crab apple): 126582170
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Entry
126582170 CDS
T09027
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04120
Ubiquitin mediated proteolysis
msyl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
126582170
04120 Ubiquitin mediated proteolysis
126582170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126582170
Enzymes [BR:
msyl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
126582170
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
U-box type E3
126582170
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Ufd2P_core
U-box
Motif
Other DBs
NCBI-GeneID:
126582170
NCBI-ProteinID:
XP_050102147
LinkDB
All DBs
Position
9:complement(4129364..4135820)
Genome browser
AA seq
1025 aa
AA seq
DB search
MATPKRQRSREELEDIVLRKIFLVSLTGPSDSDSRVVYLEMTAAEILSEGKELRLSCDLM
ESILIDRLSGSFPAAELPFQYLIGCYKRAYDEGKKIASMKDRNLKSELESVVRQAKKLSV
SYCRIHLGNPESFPNPNFDSNKPNASPLLPLIFSEGGGSADGFGGSGSSGGIQCPPGFLE
EFFTDSDFDSLDPILKGLYEELREIVLKVSALGNFQQPLRALYFLVKLPVGARSLVNHPW
WIPKGVYLNGRVIERTSILGPFFHVSALPDHPIFKSQPDVGQQCFSEASTRRPADLLSSF
ATIKTVMNNLYDGLTEVLLLLLKNADTRENVLEYLAEVINKNSSRAQIQVDPLSCASSGM
FVNLSAVMLRLCEPFLDANLTKRDKIDPKYVFYSNRLELRGLTALHASSEEVTEWINKAS
MGNTDGETRLLQSQEATSSGNSVNVKPNSEKAKYSFICECFFMTARVLNLGLLKAFSDFK
HLVQDISRSEDTLTTLKAMQGQTSSPQLEIDIARLEKEIESYSQEKLSYEAQILRDPTVI
QSALTFYRLMVVWLVRLVGGFKMPLPSTSPTEFASMPEHFVEDAMELLIFASRIPKALDG
VLLDDFMNFIIMFMASPEYIRNPYLRAKMVEVLNCWMPRGSGSSITATLFEGHQLSLEYL
VRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWHVPSHRNAWKQIAKEEEKGVYL
NFLNFLINDSIYLLDESLNKILEHKELEAEMSNTAEWERRPAQERQERTRLFQSQENIIR
IDMKLANEDVSMMAFTTEQITAPFLLPEMVERVASMLNYFLLQLVGPQRKSLSLKDPEKY
EFRPKQLLKQIVYIYVHLAKGDSENIFPAAISKDGRSYNEQLFSAAADVLRKIGEDGRII
QEFIELGAKAKVAASEAMDIEAILGDIPDEFLDPIQYTLMKDPVILPSSRITVDRPVIQR
HLLSDSSDPFNRSHLTADMLIPDNELKARIQEFIRSQESKKRGEDLSTQSSKATIQTTTS
EMLID
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccgaaacgccagcggtcccgggaggagttggaggacatagtcctccgcaaa
atctttctcgtatcgctgaccggtccatcggactccgattcccgagtcgtttacttggag
atgactgcggcagagattctcagcgaggggaaggagttgaggctcagttgcgacctcatg
gaatcgattctaatcgatcggctatccggcagcttccccgctgctgaactgccgttccag
tacctgatcgggtgttacaaacgcgcctacgacgagggtaagaaaattgcttccatgaaa
gataggaacttgaagtcggaattggaatccgtggttaggcaagcgaagaagctttcggtt
tcgtattgtaggattcatttggggaatcccgaatcgttccccaacccgaatttcgattcg
aacaagccgaatgcctcgcctttattgccattgatcttctcagagggtggcggttcagct
gatgggtttggaggaagtgggagtagtgggggaattcagtgcccacctgggtttttggag
gagttcttcaccgactccgatttcgatagcttggacccaattttgaagggattgtatgag
gagcttagagagattgtgcttaaggtttcggccctcggaaacttccagcagccactgagg
gctctgtattttttggttaagttgccggttggtgcaaggtcacttgtgaatcacccgtgg
tggattccaaaaggggtgtacttgaatgggcgtgtgattgagaggactagcattttgggt
cctttttttcatgtcagtgctctgcctgatcatcctattttcaagagccagcctgatgtt
gggcagcagtgcttttcagaagcttcaactcgtagaccagctgatctgctatcttcattt
gccacaattaagacagtcatgaataacttatatgatggccttactgaagttcttctctta
ctactgaaaaatgctgacacccgtgagaatgttcttgagtatcttgcagaggtgatcaac
aaaaactcatcaagggctcagattcaggtagatcctctttcatgtgcaagttcaggcatg
tttgtcaatctcagtgctgtcatgcttcggctttgtgagccgtttttagatgcaaattta
acaaaaagagacaaaattgatccaaaatatgtattctacagtaaccgtttggagttaaga
ggtttgactgctttacatgcatcgtctgaagaagttactgaatggattaataaagctagt
atggggaatactgatggtgaaactcgccttttacaatctcaagaagccaccagttccgga
aatagtgtcaacgtgaagccaaatagtgaaaaagctaaatattcatttatttgcgaatgc
ttcttcatgactgcaagggtgctcaatctgggattgttgaaagcattttctgactttaaa
catttagtacaggacatttcaaggtctgaagatactctcaccacacttaaagccatgcaa
ggccagacatcttctccacaattggagatagatatagctcgccttgagaaggaaatagag
tcatattcgcaggaaaagctttcttatgaagctcagatattaagggatccgacagttata
cagagtgctcttactttctatcgtttgatggtggtgtggctagttcgcttggttggtggg
tttaaaatgcccctgccatcaactagccctacggagtttgcttctatgccagagcatttt
gtggaagatgccatggagttgcttatatttgcttcccggattccaaaagccttggatggg
gttttgttggatgattttatgaacttcattataatgtttatggccagcccagaatatatc
aggaacccttacctaagagcaaagatggttgaagtcctaaactgctggatgccccgtgga
agcggatcatctattacagcgaccctatttgaagggcaccaactatctcttgagtatctt
gtgaggaatctcttgaagctatatgttgacatcgagttcactggttctcacacacagttc
tatgacaagtttaatattcgccacaatattgctgaacttcttgaatatctgtggcatgtc
cctagtcatcgaaatgcttggaaacagattgcaaaggaagaggagaagggtgtttacttg
aatttcttaaacttcttgatcaatgatagcatctatcttctggatgaaagtcttaacaaa
attcttgaacacaaagaactggaagctgagatgtcaaacactgcagagtgggagcgcaga
cctgctcaagaaaggcaggagagaacacgcctcttccagtctcaagagaatattatccga
atagatatgaagttagcaaatgaagacgttagtatgatggcatttactacagaacaaatt
acagctcctttcctacttcctgagatggttgaaagggtggccagcatgctcaattacttt
ttgttgcaattagtaggccctcaaagaaaatctcttagcttgaaagaccctgagaagtat
gaattccgtccaaagcaattgcttaagcagattgtatacatatatgttcatttggcaaag
ggtgattcagaaaatatatttccagctgccatctcaaaggatggtcgttcgtacaatgag
cagttatttagtgctgcagcagatgtcctaaggaaaattggtgaagatgggaggatcata
caagagtttattgagctaggtgcgaaagccaaggttgctgcttcggaggccatggacatt
gaagctattcttggggacataccagatgaattcctcgatccaattcagtacactttaatg
aaggatccagttatcttaccttcttcaagaatcacagtagaccgacccgtcattcaaagg
catcttcttagtgatagttctgatccgttcaaccgatcccatcttactgcggacatgctg
ataccggacaatgagttaaaggcaaggatacaagagttcattaggtcccaagaatcgaag
aagcgcggggaagacttgagcacgcagagctccaaggcaacgatacaaactacaactagt
gaaatgctaattgattag
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