Malus sylvestris (European crab apple): 126582264
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Entry
126582264 CDS
T09027
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126582264
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126582264
03012 Translation factors [BR:
msyl03012
]
126582264
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126582264
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
126582264
Translation factors [BR:
msyl03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
126582264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
OB_NTP_bind
R3H
HA2_C
Ank_2
HA2_N
AAA_19
ResIII
ATPase
nSTAND3
AAA_22
Ank_5
AAA_23
NPHP3_N
Rad17
AAA_7
Ank_3
T2SSE
ABC_tran
Motif
Other DBs
NCBI-GeneID:
126582264
NCBI-ProteinID:
XP_050102293
LinkDB
All DBs
Position
9:11287481..11297473
Genome browser
AA seq
1277 aa
AA seq
DB search
MARKKKHTKVDEPTKNRLLDALERFNASTDEVYTFEAGLSSFERAFVHEQCRRWSMKSKS
KGKGEHRCISVSKIRKKNTDVPSLSSLTFSEGTKEVLSDLFVHYPPGDEVEDLELSGKSS
NKNESAQRKRDNTFRKPLMNKEEIAKKVESLASKLKNNANLRKIFEDKSKLPIMSYKDVI
TSTVESHQVILISGETGCGKTTQVPQFILDHMWGKGEACKIVCTQPRRISATSVAERVSQ
ERGENVGDDIGYKIRLESKAGRQSSIVFCTNGILLRMLVSRGADRSKADASNKDTEHNLA
DITTIIVDEIHERDRYADLMLAIIRDMLSSHPHLHLILMSATVDAERFSKYFGGCPIIRV
PGFTYPVKSFYLEDVLSILKSAEHNHIDNTVVGLQTEDPDLTEEDKLALDEAINLAWSND
EFDRLLELLSTEGTHKVFDYQHSLTGLTPLMVFAGKGRTAYVCMLLSFAADCHLRAKDGT
TALELAERENQQEIVEILKEHIENSLSNSMKEQLLLDKYLQYFNPENIDVVLIEQLLKKI
CNDSKDGAILVFLPGWDDINKTRERLLMNPHFRDSSRFLIIALHSMVPSFEQKKVFKRPP
HGCRKIVLSTNMAETAITIDDVVYVIDTGRMKEKNYDPYSNVSTLQSSWVSKANAKQREG
RAGRCQPGICYHLYSRLREASLPNFQEPEIKRMPIEELCLQVKLLDPECKVEEFLRKTLD
PPRAETIRNAVSVLQDIGALSLDEKLTDLGEKLGTLPVHPLTSRMLFFAILMNCLDPALT
LACASDYRDPFALPMLPDERTRAAAAKFELASLYGGLSDQLAVIAAFDCWKAAKERGQER
DFCSRYFVSSSTMHMLSGMRGQLQKELSRHGFIPEDVSRCSLNARNPGILRAVLVAGLYP
MVGRLLPPLKNGKRTLVETASGGRVQLHVHSINTKLSYKANPGERPLIVYDEVTRGDGGM
NIRNCTVVAPLPLLLLSSEIAVAPADDDDDNDEGSDVEYIEDGSDEDVMEIDRKSGGQRE
EKIMSSPDKSVKVIVDCWLHFGSKALDVAQVYCLRERLSTAILFKVTHPRKDLPPALGAS
VYAIACALSYDGLSGITLPEESVESPTSVLESRAYLQFLISGNSHDQHILRPHSKPTRNT
GHKLSYSPKPCEGHGTSLMSHNAHQTHQSALVSHGTHQTHLSPHERPPPQGTSVLAANGA
VRSYVKGNKAANLSGPSSHSVGPPLHSASMTAHQKPPSEGTRLPGINGGAKVNEPLSQTV
GQPVKSTSRKKRRNGAG
NT seq
3834 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggaagaagaaacatactaaagttgatgaacccacaaagaaccgattacttgat
gcactcgagcggttcaacgcttcaactgatgaagtttacacattcgaggccggtctctcg
agcttcgaacgggctttcgtgcatgaacaatgcaggagatggtctatgaaatcgaagagt
aaagggaaaggggaacaccggtgtatctctgtttccaaaattagaaagaagaacactgat
gtaccaagtctcagttccttgacattttccgaaggcacaaaagaagtattaagtgacttg
ttcgtacattacccacctggtgatgaagtggaggacttagaattgtctgggaaaagtagc
aataagaatgagagtgcccagcggaagagggacaatacgtttcgcaagcctttgatgaac
aaggaagaaattgcaaagaaagtggaatcacttgcttctaaattaaagaataacgctaac
ttgagaaagatttttgaagacaagtccaagcttccaattatgtcctacaaggatgtcatt
acatcgacagttgaatctcaccaggtcattcttatatctggtgagactgggtgcggaaaa
acaacacaggtcccacaatttattttggaccacatgtggggcaagggtgaggcatgtaaa
atagtgtgtactcaacctcgacgtatctcagccacttcagttgctgagagagtctctcag
gaaagaggagaaaatgtcggagatgatattggatacaagatacggttggaaagtaaagct
gggaggcaatcatcaattgttttctgcacaaatggaattttattgaggatgctagtttcc
agaggtgctgatagatcaaaagcagatgcctcaaacaaagataccgagcataatcttgct
gacataacgaccattatagtggatgaaattcatgaaagggatcgctacgctgatttgatg
ctagcaattatcagagacatgctttcttcacaccctcatctacatctgatattaatgagt
gcgactgttgatgctgaacgattttcaaaatattttggtggctgcccaattatccgtgtt
cctgggttcacttatcctgttaaaagtttctatttagaggatgtactttctatcctgaaa
tctgcagaacataatcacattgataacactgtagtaggtttacaaactgaagaccctgac
ttaaccgaggaagataagcttgctttagatgaagctattaatttggcttggtctaatgat
gagtttgatcgccttctagaattgctttctactgaaggaacacacaaagtctttgattac
cagcattcattaaccggacttacgccgttaatggtgtttgctggaaagggtagaactgca
tatgtttgcatgcttttatcttttgctgctgactgccatttacgggccaaggatggaaca
accgcattggagttggctgaacgggaaaaccagcaagaaattgttgagatattgaaagag
catatagaaaattctctttctaactcaatgaaagaacaactgttacttgataaatatctc
caatatttcaatcctgaaaatattgatgtggttcttatagagcaattattaaaaaaaatt
tgtaatgattcaaaagatggagccatccttgttttccttccagggtgggacgatataaat
aaaacccgggagagattacttatgaatccacatttcagagattcttcaaggtttctgata
atagctctacattcgatggttccatcttttgagcaaaagaaggtcttcaaacgtccccct
cacggttgccgtaaaattgttctttcaactaatatggctgaaactgccatcaccatagat
gatgttgtttatgttatagacactggtcggatgaaagaaaaaaattatgatccttatagt
aatgtatcaactcttcagtcttcttgggtgtcaaaggcaaatgccaagcagcgagagggc
cgagcaggccgttgccagcctggaatctgttatcatctctattctagacttcgagaagct
tcattgccaaactttcaggagcctgagattaagagaatgccaattgaggagctctgtctt
caggtgaagttactcgacccagaatgcaaggtagaagaattcttgcgcaagacattggat
cccccacgtgcagagaccatacgcaatgcagtttctgttcttcaagatattggggcactg
tcgctcgatgagaaacttacagatcttggagagaagttaggcactctacctgttcatcca
ctgacgagcaggatgcttttctttgcaatactgatgaactgtctagacccagctttgact
ctggcatgtgcttctgactacagggatccatttgccctgcctatgttacctgatgaaagg
acgagagctgctgctgctaaattcgaacttgcttcattgtatggtggccttagtgatcag
ctagcagtcattgcagcatttgactgctggaaggctgcaaaagaaaggggtcaagagaga
gatttctgttctcgatactttgtgtcttcaagcacaatgcacatgctatctggtatgcgt
gggcagctccaaaaggagctaagtcggcatgggtttattcccgaggatgtatcaagatgt
agcttgaatgcaaggaacccaggtatactccgtgctgttcttgtggccggtttgtatcca
atggtgggtagattgcttcctcctctcaagaatgggaaacgaactttagtagagactgct
agtggtggtagagttcaattgcacgtccactcaattaacactaagttatcatacaaggca
aatcctggggaacgtcctttgattgtttatgatgaggtaactcgcggggatgggggtatg
aatatacggaactgcactgttgtcgcaccacttccattattattgctttcatcagaaatt
gctgttgctccagccgatgatgatgatgacaatgacgaggggagtgatgtggagtacata
gaggatggaagtgatgaagatgtaatggaaatagatcgtaagtcaggtggacaacgcgag
gagaaaattatgtcgtctcctgataaatcagtcaaagttattgtcgattgttggcttcat
tttgggtccaaagctcttgatgttgctcaagtttactgcttgagagaacgcctatctaca
gcaatcttattcaaagttacgcatccaaggaaagatttgcctcctgctctcggggcctct
gtctatgctatcgcatgtgctctatcttatgatggtctatctgggatcacattaccggag
gaatctgtggagtcaccgacttctgtgctggagagtcgagcatacttgcaatttcttatc
agcggtaactcacatgaccaacacatcctccgaccacactctaaaccaacacgtaacaca
ggccataaactttcttactctcccaaaccatgtgaggggcatggaacatcacttatgagc
cataacgcacaccaaacacatcagtctgcacttgtgagccatgggacacaccaaacacac
ctcagtccacatgagaggcctccaccacaaggtactagtgtacttgccgctaatggagca
gtgaggtcttatgtgaaaggaaacaaagcagccaacttgagtggcccttcaagtcacagc
gttggaccaccgcttcattcggcttccatgactgcacaccagaagcctccatcagaaggt
actaggttacctggcattaatggaggggcaaaggtgaatgagccattaagtcagactgtt
ggccaaccagttaagtcaacttcgaggaagaagcgtaggaatggtgccgggtaa
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