Malus sylvestris (European crab apple): 126582560
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Entry
126582560 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126582560 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126582560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126582560
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126582560
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126582560
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
126582560
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
126582560
NCBI-ProteinID:
XP_050102659
LinkDB
All DBs
Position
2:complement(31923742..31929800)
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AA seq
572 aa
AA seq
DB search
MLPHYNSFPRHSNQAHTTGISAPPPHQMQPQLGIRNPQIPVQFSNSNSMIAQPNFMNLPN
NLLPMQNNHLGMPQFGSVGPTSQPGQPNVGFFGSQSNGQGMNSVGQFCNLVQQVNQLMSS
QVPGQIFGHNMLNLQQQMNPNMGLPYGQFCLPNSMQNMNQFVPMQMQNPSQVRPNYAFQG
SNQAPRATMSQNVPLFANNQANLHSNQAGQQANQNQQNLGLPPMQGTQLLQGNNTNSNGG
YNSNSNWKQSPSRNFTKNPKNHQGGFQNPQSHHMKNAKGKFTFRNGHKGKGLRNESEGKF
ALANSSNQGKQGKRSLSLSYTEQEIERWREERRKHYPSKSNIEKKINEKMINSEIIEREA
NIRREQLKEILTKQAELGVEVAEVPSYYLADSNQGHVKEDNESLTKKGRLANKFGKREKY
DRKDRFSKRQRSHQKGSSNNPSFNKMEPNKREPTLLQKLLSADIRRDRSHLLQAFRFMVT
NSFFKDCPDKPLKFPTVAVKESSGEEEVAEKLSSLAEKDALKGSDKSMVGRVYNNHSGNN
NDVGNHDDSGDEDDGEGEGTETPGEEEEEIIN
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgttacctcactacaattcctttcctcgccattccaaccaagctcacacgaccggtatc
tcggctccacctcctcaccagatgcaacctcaattgggtatcaggaatccccaaattcca
gtccaatttagtaattccaattccatgatagctcaacccaatttcatgaatctaccaaac
aaccttcttcctatgcaaaataaccatctgggtatgcctcagttcggttccgttggccct
acatctcagccgggtcagccgaatgttgggttttttggttcgcaaagtaacgggcaaggt
atgaactcggttgggcaattttgcaatttggtgcagcaagtgaatcaattgatgtcttct
caagtgcctgggcagatatttgggcataacatgttaaatttacagcaacagatgaacccg
aatatgggtttgccgtatgggcagttttgtttgccgaattccatgcaaaacatgaatcaa
tttgtgccaatgcaaatgcaaaatccatcgcaagtccgtcctaattatgctttccaggga
tcaaatcaagcacctcgggccacaatgtctcaaaatgtcccattgtttgcaaataaccag
gctaatctgcattctaatcaggcaggccagcaagctaaccagaatcagcaaaacttgggt
ctacctccaatgcaagggacacagcttctgcagggaaataatacaaacagtaatggtggt
tacaattcaaattccaattggaaacaatcaccaagcagaaactttacaaaaaatccgaag
aatcaccaagggggatttcagaatccgcagtcacatcatatgaaaaatgcaaagggaaag
ttcacttttcgtaatgggcacaaaggaaaagggttaagaaatgagagcgaaggaaagttt
gctctggccaactcttcaaaccagggcaagcaagggaaaagatctctttccttgtcatat
acggaacaagagattgagcggtggcgtgaggaacgtaggaagcactacccatcaaaatcc
aacatagagaagaagataaatgaaaagatgataaattcagagatcattgaaagagaggcc
aacattcgacgagagcaactcaaagaaattcttacaaagcaggctgagttgggagttgaa
gttgccgaagtaccatcatactacctcgcagattctaatcaagggcatgtaaaagaagat
aatgaatcattgaccaagaaggggagattggcaaacaagtttggtaagagagaaaaatat
gatagaaaggatcggttttccaagaggcaaagatcacatcaaaagggttcgtctaataac
ccttctttcaacaagatggagccaaacaaaagggagccaaccttgctgcagaagcttctt
agtgcagatattaggagagacagaagccacctgctgcaggcgtttaggttcatggtgaca
aactctttcttcaaagattgcccagacaaacctttgaaatttcctactgtagcagttaaa
gaaagctcgggtgaggaagaggtggctgaaaagttgtcctcacttgcggagaaagatgct
ttaaagggaagcgataaatccatggttggaagagtttataacaatcattctggaaataac
aacgatgtcgggaatcatgatgatagcggtgatgaagatgatggtgaaggagagggaaca
gagacacctggggaggaagaggaagaaatcataaactag
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