Malus sylvestris (European crab apple): 126583167
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Entry
126583167 CDS
T09027
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03013
Nucleocytoplasmic transport
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126583167
09122 Translation
03013 Nucleocytoplasmic transport
126583167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126583167
03041 Spliceosome [BR:
msyl03041
]
126583167
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
126583167
Spliceosome [BR:
msyl03041
]
Complex C
Other components
EJC/TREX
126583167
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
126583167
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
ABPF_N
DUF6058
Motif
Other DBs
NCBI-GeneID:
126583167
NCBI-ProteinID:
XP_050103435
LinkDB
All DBs
Position
9:complement(31163979..31183809)
Genome browser
AA seq
1871 aa
AA seq
DB search
MSLPPVERAYVTDDCLRQWKNGNPSFKLPDPVPMLRFLYELCSTMVCGELPLHKCKAALD
SVEFSDEVSDQDLPSCFVDIITQLSQDIRMPGEDRARLVKLAKWLVESSLVPLRLFQERC
EEEFLWEAEMIKIKAQELKSKEVRVNTRLLYQQTKFNLLREESEGYAKLVTLLCQNSETS
SHNAAATIGIIKSLIGHFDLDPNHVFDIVLECFELQPDSDVFLELIPIFPKSHASQVLGF
KFQYYQRLEVNSPVPFGLYKLTALLVKEDFIDLDSIYAHLLPKDNEAFEHYSAFSSKRLD
EANKIGKINLAATGKDLMDDEKQGDVTIDFFAALDMETGAVCERSAECENNQTLGLLTGF
LSVDDWYHAHLLFERLSPLHPVEHIQICDSLFRLIEKSISSAYDTVRRAHLPIFGASSGT
SIDVMNTENASIHGSFIELPKELFQMLTCAGPYLYRNTLLLQKVCRVLRGYYSSALQLVN
SGEGVIDPNHVFGGNPRLHLKEARSRIEEALGTCLLPSLQLVPANPAVGQEIWEVMNLLP
YEVRYRLYGEWEKEDEQIPMVLAARQTAKLDTRRILKRLAKENLKQLGRMVAKLAHANPM
TVLRTIVHQIEAYRDMIAPVVDAFKYLTQLEYDVLEYVVIERLAQGGRDKLKDDGLNLSD
WLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGQGIELVLLEELIQQMANVHYTENLT
DDQLDAMAGSETLRYQATSFGVTRNNKALIKSTNRLRDSLLPKDESKLAIPLLILLAQHR
SVVIIEANAPYIKMVSEQFDRCHGTLLQFVEFLCSAVTPASAYAQLIPSLDDLVHKYHLD
PEVAFLIYRPVMRLFKCQGSSDVFWPLDNIDTQSITSASSESEATEHSGNVVLDLGSPWK
PITWSDLLSTAERMLPSKSWNSLSPDLYTTFWGLTLYDLYVPRNCYEAEIAKQHAALKAL
EEISDNSSSAITKRKKEKERIQESLDRLTSELHKHEENVASVRKRLSREKDKWLSSCPDT
LKINMEFLQRCIFPRCTFSMPDAVYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMIC
CCTEYEVGRLGKFLCETLRIAYYWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIK
VHWKWSQRITKLLIQCLESTEYMEIRNALIMLTKITSVFPVTRKTGINLEKRVSKIKGDE
REDLKVLATGVCASLAAKKPSWVSDEEFGNGHLDLKNGQNGSKSSAGNSIAAQGEPMGGR
VGAVPSQHSDSMNSGKEQTLKRKLVDGRLERGESSPTAKSDQGHVKLKASSSVNGSDAKP
SITSAAFQPATARSIENKKQVNEFSNKASDENMGKAAPKNPTESELRAQAKRSVPTGSLA
KALKQDVAKDDSRSGKAIGRTSSISDRDILSHASAGTSNVSSSAAVNGNTDSASAKGSAS
FARTDIHGTESKVEVAAAKSSNTRISAPKEDGGENSDAPRPHSSRLVHSPRHDNSAAASK
SSDKLQKRTSPEETDRQSKRRKGTTEVRDFEGEARVSDRERSVDARLLDPEISGTDHQSV
HKATDKPSDRSKDKGNERHEKDYKERLERPEKSRGDDLNERSRDRSMERHGRERSVEKLQ
ERGMDRNLDRLPDKSKDDRGKVRYNDVSAEKSHVDDRYHGQSLPPPPPLPPHMLPHSVSS
AKRDEDEDRRFGTTRHTQRLSPRHDEKDRRRSEDNSLISQDDSKRRREDDFRERKREDRE
GLSIKVEEREREREREREKATLLKEDTDAIVASKRRKLKREHLPSGEAGEYSPVPPPPPP
LSISLSQSYDGRDRGDRKGPIVQRSGYLEEPSPRIHGKEVPSKMARRETDPMYEWEDEKR
QRAEQKRRHRK
NT seq
5616 nt
NT seq
+upstream
nt +downstream
nt
atgtctctcccccccgtagagcgtgcgtacgtcacagatgactgccttcgtcaatggaag
aatggaaaccctagtttcaagctcccggacccggttccgatgcttcgatttctctacgag
ctctgctccaccatggtatgtggggaactgccgcttcacaagtgtaaagcggccttggat
tcggttgagttctccgacgaggtttcggaccaagacttgccttcctgttttgtggatatc
atcacccaattgtctcaagatattagaatgcctggagaggatcgtgctcgtctagtaaaa
ttggccaaatggttggtggaatcttccttagttccgttgagacttttccaggagcgctgt
gaggaagaatttttgtgggaggctgaaatgatcaagataaaggctcaggaattgaagagt
aaagaggtcagagtaaatacccgtcttctatatcagcaaacaaaatttaaccttctccga
gaagagagcgagggctatgccaagctggttactcttctttgccaaaactcagaaacttca
tcacacaatgcagcagcaacaataggaattataaagtcattaattggacattttgatctg
gacccaaatcatgttttcgatattgttttggagtgctttgaacttcaaccagatagtgat
gtctttttggagctgataccaatttttccaaagtctcatgcttcacaagtccttggtttc
aaatttcaatactatcagcgcttggaagtaaatagtccagtaccatttggactttataag
ctaacagctttgctggtgaaagaggactttattgatcttgatagcatatatgctcatcta
cttcccaaggacaatgaggcatttgagcattatagtgctttctcttccaagcgacttgat
gaggctaacaaaattggtaaaataaatcttgctgcaactgggaaggatctgatggatgat
gagaaacaaggagatgtgacaatagatttttttgccgctttagacatggaaacaggtgca
gtttgtgagcggtctgcagagtgtgaaaataatcaaactttgggcttgcttactggtttt
ctttccgtagatgactggtaccatgcacatctactatttgagcggctctcacctctccat
cctgttgaacatattcaaatctgcgacagcttgtttaggctcattgaaaaatcaatctct
tctgcttatgacactgttcgtcgagcacatcttccaatatttggggcttcctcaggaact
agtattgatgtgatgaatacagaaaatgcatcaatccatggatcatttatagaacttcca
aaagaactttttcagatgcttacttgtgctggaccatatctttatcgtaatactttgttg
ctgcagaaggtctgtagagtattgagaggttattactcgtctgcgcttcagcttgtaaac
agtggtgaaggagtcatagatcccaatcatgtttttggaggtaatcctcgtctgcatctt
aaggaagcaaggtcaaggatagaggaagctttgggaacatgtctacttccttcattacaa
ttggtacctgcaaatccagctgttggacaggagatctgggaagtgatgaatctgcttccc
tatgaggtgcggtatcgtttatatggtgagtgggagaaagaagatgagcagattcctatg
gttttagctgcaagacaaacagccaagttggacacaagaagaattttgaaacggcttgca
aaagaaaatttgaagcagctgggtcggatggttgcaaaactggctcacgcaaatccaatg
actgtactaagaacaattgttcatcagattgaggcgtacagagatatgattgctcctgtt
gtagatgcatttaagtatttgactcagctggagtatgacgttttggaatatgttgtcatt
gagcgtctggctcaaggaggtcgtgacaagctaaaagatgatggccttaatttgtcagac
tggcttcaatctttggcttcattttggggtcacttgtgtaagaaatacccatctatggaa
ttgagggggcttttccagtatcttgtgaaccaactaaaaaagggccaaggaattgaactg
gttctcctcgaggagcttattcagcaaatggcaaatgtccattacactgagaatctgact
gatgatcaactggatgccatggcaggcagtgagacgctgcgatatcaggcaacttctttc
ggtgttactcgtaataacaaggcactaatcaagtccaccaacaggctaagggactcactg
ctaccaaaggatgaatccaagttggcaatcccccttctaatacttcttgctcagcatcgt
tctgtggtcataatagaggcgaatgcaccttacatcaagatggttagtgaacagtttgat
agatgtcatggaaccctccttcaatttgtggaatttctttgcagtgctgtgacaccggca
tcggcttatgctcagctaattccttcgcttgacgatcttgttcacaaataccatcttgat
ccagaggttgctttcttaatttatcgccctgtaatgaggctcttcaagtgccaagggagt
tctgatgtcttctggcctctagacaatattgacactcaaagtatcacgtctgcaagttca
gagtctgaagctacagagcattctggaaatgtggttctggatcttgggtctccatggaag
cctataacgtggtcagatcttcttagtactgctgaaaggatgctgccttcaaaatcctgg
aatagcctgtcacctgatctctatactacattttgggggctcacgctctatgatctttat
gtccctagaaattgttatgaggctgaaattgcaaagcagcatgctgctcttaaagctctg
gaagagatttctgataattcaagttcagcaataaccaaacggaagaaagaaaaagaacga
attcaagaatccctagatcgcctgactagcgaactccataagcatgaagaaaacgtcgca
tctgttcgtaaacgcttatctcgggagaaggacaaatggttgagttcttgccctgatact
ttgaagatcaacatggagttccttcagcgttgtatatttccacgctgtactttcagtatg
ccagatgctgtgtattgtgccatgtttgtgcacactcttcattcccttgggacaccattt
tttaacacagtcaaccacattgatgttctcatctgtaaaaccttgcagcctatgatatgc
tgctgtactgaatatgaagtaggtagacttgggaagtttctctgtgagacgttgaggatt
gcttactattggaagagcgatgaatctatttatgaacgcgaatgtggaaacatgccaggc
tttgctgtatattatagatatccaaatagccagagagttacctacggccagttcatcaag
gttcactggaaatggagtcaaaggattacaaagttattgattcaatgtctggaatcaaca
gagtacatggaaattcgaaatgcactcataatgttgacaaaaataactagtgtttttcca
gttactcgaaaaactgggattaatcttgaaaaacgggtttccaagataaagggtgatgag
agagaggacctcaaggtgctggcaacaggtgtctgtgcctctcttgctgctaaaaagcct
tcatgggtttcagatgaggaatttggtaacggacatcttgatttaaagaatggacaaaac
ggatcaaagtcttctgctggtaattcaatagctgcacagggtgaacctatgggaggaaga
gttggagctgtaccctcccaacactcggattcaatgaactcaggcaaagagcagactcta
aaaagaaaacttgtagatgggaggttggaaagaggtgaaagtagcccaactgcaaaatct
gatcaagggcatgtaaaacttaaagctagctcatcggtgaatgggtcagatgctaagcca
tcaataacctcagctgctttccaacctgcaacggcaagatctattgaaaataaaaaacaa
gtgaatgaattctcgaataaagcctcagatgaaaacatgggaaaagctgcaccaaagaac
cctacagaatctgagttgagagctcaagcaaaacggtcagttcctactggatcacttgct
aaggcgctgaaacaagatgttgcaaaagatgatagtagatctggaaaagcaattggcaga
acttctagtatcagtgacagagatattctttcccatgcatcagctgggacttcaaatgtt
tcctcttccgccgcagtaaatggtaacacagattcagcgtcagctaaaggttcagcttca
tttgcgaggactgacattcatggtactgaatcaaaggtggaggttgcagcagcaaaatct
tctaatacaaggatttctgctccgaaggaagatggtggtgaaaattctgatgcaccaagg
ccccattcttctcgacttgttcactctcctaggcatgataattctgctgctgcttcaaaa
tctagtgataagctgcaaaagagaaccagtcctgaagaaactgacagacagagcaaacgg
cggaaagggacaactgaagtgagagattttgagggcgaagctcgagtgtcagaccgagag
aggtctgttgatgctcgactgttggatcctgaaatttcaggtactgatcatcaaagtgtt
cacaaggccactgataagccttctgaccggtccaaagataagggcaatgaaagacatgaa
aaggattataaggaaagattggagcgtcctgaaaagtcgcgtggagatgatttgaatgag
agatccagggacaggtcaatggagagacatggaagggagcgttcagtagagaaacttcag
gagaggggtatggataggaatttggatagacttcctgacaaatctaaggatgacagaggt
aaagtaaggtacaatgatgtatcagcggaaaaatctcatgttgatgatcgatatcatgga
caaagcttacctccgccaccacccttacctcctcacatgcttccacattctgttagttct
gctaaaagagatgaagatgaagatagaaggtttggaactacaagacatactcagaggctt
tccccaaggcatgatgagaaggaccgtagacgatctgaagataattccttaatttctcaa
gatgattcaaaacgtagaagagaagatgattttcgagaaagaaagcgcgaagatcgtgag
gggctgtcaataaaggtagaggagcgggaacgggagagggagagagagagggagaaagca
accctcttgaaggaggatacagatgcaattgtggcttctaagaggcggaaacttaaaaga
gagcatctgccttccggggaagcaggtgagtattcaccagttccccctccacctcctcct
ctttcaattagtttgtcccagtcatatgatggaagggataggggagaccgaaaaggaccc
attgtccagcgatcaggctacttggaggaaccaagtccgaggattcatggtaaagaagta
cccagcaaaatggctcgtcgtgaaactgacccgatgtatgaatgggaggatgagaaaagg
caaagagctgaacaaaagcgaaggcatcggaagtga
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integrated database retrieval system
