Malus sylvestris (European crab apple): 126583501
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Entry
126583501 CDS
T09027
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
KO
K14962
COMPASS component SWD2
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126583501
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126583501
03036 Chromosome and associated proteins [BR:
msyl03036
]
126583501
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
126583501
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
126583501
COMPASS/SET1 complex (yeast)
126583501
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_EML_2
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
WD40_RFWD3
WDR90_beta-prop_4th
Beta-prop_SPT8
Beta-prop_IFT122_1st
Beta-prop_Nup120_160
WD40_MABP1-WDR62_1st
Beta-prop_NUP159_NUP214
NBCH_WD40
Beta-prop_DCAF12
Beta-prop_EIPR1
Beta-prop_NWD2_C
Beta-prop_SCAP
WD_LRWD1
DUF2963
Motif
Other DBs
NCBI-GeneID:
126583501
NCBI-ProteinID:
XP_050103829
LinkDB
All DBs
Position
9:complement(1685407..1689076)
Genome browser
AA seq
338 aa
AA seq
DB search
MKTSMTELDDETVRSMAIGAVFSDFGGKINSLDFHRKDDLLVTASEDDSVRLYDIATAKL
IKTTFHKKHGADRICFTHHPSSVICSSKYNLDTTGESLRYLSMYDNRCLRYFKGHKERIV
SLCMSPVNDSFMSGSLDHTVRIWDLRVNACQGILHMRGRPTVAYDQQGLVFAVAMEGGAI
KLFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGY
SVEPSPNVIIEATFTPDGQYVVSGSGDGNLHAWSINNRNEVACWDSHIGVPSCLKWAPRR
AMFAAASSVLTFWIPNEANEPTHMETEAGAADPEHPSQ
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atgaagacgtcgatgacagagctcgacgacgaaacggtgcgcagcatggccattggcgcc
gttttctcggacttcggtgggaagataaattcgcttgattttcatcgaaaggacgattta
ctagttactgctagcgaggatgattcagttcgactctatgacattgcaactgctaagttg
ataaagactacatttcataagaaacatggtgcagatcgtatatgctttacccatcaccca
agttctgttatatgctcttcaaaatacaatctggataccactggagaatcactgcggtat
ctgtcaatgtatgataatcgatgccttcgctacttcaaaggacataaagagaggattgtc
tccctctgtatgtctccagtgaatgatagcttcatgtctggttcgttggaccacaccgtc
agaatatgggatctccgtgttaacgcctgccaaggaattttacatatgcgtggtaggcct
acagttgcctatgaccagcaaggtcttgtttttgccgtggcaatggaagggggtgcgatc
aaattgtttgactcacgctcctatgacaagggtccatttgacacctttttagttggtgga
gatactgctgaagtttgtgatatcaaatttagcaacgatggcaaatcaatgctattgaca
accacaaacaacaatatctatgttcttgatgcatatggaggggagaagcgttgtgggtac
agcgtggaaccctctccgaatgtaattatcgaggcaacttttaccccagatggccagtat
gtggtgtcaggctctggagatggaaatttgcacgcctggagcatcaacaaccgaaatgag
gtggcatgctgggacagtcacatcggagttccgtcatgcttgaagtgggctcctcgcaga
gccatgtttgccgctgcatcgagcgttctcacgttttggatacctaatgaagcaaacgag
cctactcacatggagaccgaagctggtgctgccgatcccgagcatccttctcagtga
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