Malus sylvestris (European crab apple): 126583510
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Entry
126583510 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 14-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126583510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126583510
03009 Ribosome biogenesis [BR:
msyl03009
]
126583510
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126583510
Spliceosome [BR:
msyl03041
]
Complex A
U1 snRNP components
U1 related factors
126583510
Complex B
126583510
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
Pre-60S particles
Helicases
126583510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
126583510
NCBI-ProteinID:
XP_050103847
LinkDB
All DBs
Position
9:complement(1782619..1788384)
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AA seq
673 aa
AA seq
DB search
MAATATAAGPRYAPEDPTLPKPWRGLVDGKTGYLYYWNPETNVTQYDRPTGSVAPSKPSS
AQSISSSVHVHQSSQGQRRPDEGDDRYGRGSNGGSKFDTGSRNQQTARSATVSSHNTPSG
TLSAHGGSSLKGNGSDNGSGLSAEAYSRRHEISVVGDNVPPPFTSFESTGFPSEILREVQ
KEGFSAPTPIQAQSWPVALQSRDIVAIAKTGSGKTLGYLLPGFIHLKRARNNPQMGPTVL
VLSPTRELATQILDEAVKFGKSSRISCVCLYGGAPKGPQLRDIDRGADVVVATPGRLNDI
LEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVKEIPARRQTLMYTATWPKEVRKIAA
DLLVKPVQVNIGNVDELVANKSITQYVEVLTSMEKHRRLEQLLRSQEPGSKIIIFCSTKK
MCDQLSRNLTRQFGAAAIHGDKSQSERDYVLNQFRSGRTPILVATDVAARGLDIKDIRVV
INYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYASDLIKVLEGANQRVPPEVRE
LASRGGGMNRFRRWGSGPSGGRDGGRGGRNDSSYGGRDGGRGGGYGFTPSSGRYGQTNGY
DRGRSPSPVKASGYRARSRSPERFAKALPTGGGSAGGWSFHKSMMERERERTRSSPPRKR
SAEEAEEGMIHPE
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggctgccactgcaactgccgctggtcctcgatatgctccggaggacccaactcttccc
aaaccatggagaggactcgttgatggtaaaactgggtatctttactactggaaccccgag
accaatgtcacccaatatgataggccgactggctcagttgctccatcaaagccttcttca
gcacagtctataagctcttcagttcacgttcaccaatcttcacaaggacaacgtcgtcct
gatgagggagatgataggtatggcagaggcagcaatggtgggtccaagtttgacacagga
tcaagaaatcagcagactgcaagaagtgcaacagtgtcttctcataataccccgagtggg
acactaagtgcacatggaggatcttctttgaaaggaaatggatcagacaatggaagcggt
ttgtctgctgaggcttatagtcgccgacatgaaatatctgttgttggtgataatgtgcct
ccaccgtttacttcatttgaatctactggcttcccatctgagattcttagagaggtacaa
aaagaaggtttctctgccccaactccaattcaagcacagtcttggccggttgctcttcaa
agtagagatatagtagccattgctaaaactggttccgggaagaccttggggtatttactt
ccaggatttatccatctcaagcgtgcccgcaataaccctcagatgggtccaactgtattg
gtgttatcaccaactagggagctggcaacacagattttagatgaggcagtgaagttcggg
aagtcgtcaaggatatcttgtgtgtgtttgtacggaggagctccaaagggtccacagttg
agagacattgaccgaggagcagatgttgtggttgccactcctggtcgcttgaatgatatt
cttgaaatgaagagaatcagtctccatcaagtttcttacttagtgttggatgaggctgac
cggatgctggacatggggtttgaaccacaaataaggaagattgtgaaggagatacctgct
cgtcgccagaccctaatgtatacagcaacttggccaaaggaggttcggaagattgcagct
gatctgctggtcaaacctgttcaggttaacattggcaatgttgatgaactggttgcgaat
aagtctatcacacagtatgttgaagtactgacgtcaatggagaagcacagacgactggag
cagcttttgcgatctcaagagccaggatcgaagataataatcttttgttcaaccaagaag
atgtgcgatcaactttctcgcaacctaacccgccagtttggagctgctgcaattcatggc
gacaaatctcagagtgagagggattatgtgttgaatcaatttcgctctggaaggactcca
attcttgtagcaactgatgttgcagctcgaggattggacatcaaggacataagggtggtt
atcaactacgacttccctactggagtagaggattatgttcacaggattgggagaactgga
agagcgggcgccactggcctggcttacacatttttcggtgatcaggatgccaagtatgca
tcagatctcatcaaagttttggaaggggctaatcagcgtgtccccccagaagttcgtgag
ctagcttcccgtggtggagggatgaaccggttcagacgttggggttctgggcccagtggt
ggtcgtgatgggggtcgtggtgggcgaaatgattcaagttatggtggaagggatggtgga
aggggaggaggatatggatttactccctcttctggcaggtatggtcaaaccaatgggtat
gacagaggccgcagtcccagccctgtcaaggcgtcaggatatagagcccgtagccgtagt
cctgagaggtttgccaaggctctgccaacaggtggaggctctgctggtggttggagtttc
cacaaatcaatgatggaacgggagagggagaggacacggtcgtcgcctccacgtaaacgc
agtgctgaggaagctgaggagggcatgatacatccagagtaa
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