Malus sylvestris (European crab apple): 126584640
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Entry
126584640 CDS
T09027
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03013
Nucleocytoplasmic transport
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
126584640
03015 mRNA surveillance pathway
126584640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126584640
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
126584640
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
126584640
NCBI-ProteinID:
XP_050104927
LinkDB
All DBs
Position
10:32214532..32220457
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AA seq
404 aa
AA seq
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MAKPTRARRSPSGSASGSSSRSRSRSRSFSGSDSHSSPLSRSRSRSRSFTSSSSPSRSGS
SRSRSPPASRKSPEVAKRGRSPPPQSKRASPPPRKASPVHAVHESLVLHIDALTRNVHEG
HLREIFCNFGEVVNVELAMDRTVNLPKGFGYVEFKIRADAEKAQLYMDGAQIDGNVVRAK
FTLPQRQKVSSPPKPVATAPKRDTVKTDGVSADKDAPKRPREASPRRRGALSPRRRSPVS
RRGESLRRALDSPPRRHAASPARPYCRGGSPPRRRLASPSRGRSGSPPPRRRSPIRRIRG
SPIRRRSPGPPRRGSPTRRFRSPPRRSPIRRRTRSPIRRPGRSRSRSISPRRGRAPATRR
GRSSSSGSPSPRQVPRKISHSPRRPLRGRSSSKSSSSSSPPRKP
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccaacccgagcccgtcgctcgccgtcaggctccgcatccggctcatcctcc
cgctcccgctcgcgttcccgctccttctcaggctccgactcccactccagcccgctttct
cgctcccgatctcgctccaggtccttcacctcttcctcctctccgtctcggagtggcagc
tctcgcagccgtagcccccctgcctccagaaaaagtcctgaagttgctaaacgaggtcgt
tctccaccgccacaatctaaaagggcatctccacccccaaggaaagcttctccagttcat
gcagttcatgagtcacttgttcttcacattgacgcactaacaagaaatgtgcatgaaggc
catttacgagaaatattctgtaactttggtgaagttgtcaatgtggagctggcaatggat
cgtactgttaatcttccaaaaggatttggatatgttgagttcaaaatacgagcagatgct
gaaaaagcacaattatacatggacggtgctcaaattgatggtaatgtcgttcgagcaaag
tttacattacctcaacgtcagaaggtgtcttctccccctaagcctgttgccactgctcca
aagagagacactgtgaaaactgatggtgtcagtgctgacaaagatgcaccaaagcgaccg
agggaagcttctcctcgtcggagaggtgctctctcaccacgaaggagatcacctgtatct
cgaagaggtgaatctctaagacgagcattagattctccaccgcgtcgtcatgctgcctca
cctgcgcgtccctactgccgtggtggttcacctccaaggaggaggcttgcatctccatcc
agaggtcgttctggatcaccgccaccaaggcgacgttcccctattagaaggatacgagga
agtcccattcgtagacgctctccaggacccccaaggcgtggttcacctactagacggttt
cgtagccctcccagaaggtctccaattcgtaggcggacccgctctcccattcgtaggcct
ggtcgatcacgttcaaggtcaatctcgccgcggagaggtcgagcaccggctactagacgt
gggaggtcatcgtcatctggatcacctagtccacgacaggtaccccgaaaaatctctcat
agtccaagaaggcctttgaggggaagaagcagtagcaagagcagcagcagcagttcaccc
cctcgtaagccatag
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