Malus sylvestris (European crab apple): 126584793
Help
Entry
126584793 CDS
T09027
Name
(RefSeq) putative pectate lyase 2
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl00040
Pentose and glucuronate interconversions
msyl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
126584793
Enzymes [BR:
msyl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
126584793
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
126584793
NCBI-ProteinID:
XP_050105101
LinkDB
All DBs
Position
10:complement(42102141..42103883)
Genome browser
AA seq
388 aa
AA seq
DB search
MASLAPLILLLLCFLTCIAPTFQAYSPDYYTTAKITPKNIMNVVDSCWCTKSDWATNRRA
LANCAVGFGKDALGGKNGAAYVVTTSDDDPVNPAPGSLRYGVIQTQPLWIVFAKDMVITL
KNELIMNSFKTIDGRGAKVEIAYGPCITVQGVSHVIIHGLSIHDCKPGKGGNVRSTPTHV
GQRLGSDGDAISVFASSHVWIDHCFLARSTDGLLDVTHASTAVTITNNYFSQHDKVMLLG
HNDNFSEDKNMRVTIAFNRFGAGLIERMPRVRFGYAHVANNIYEEWKMYAVGGSANPTIF
SEGNYFIAPETPFAKQVTKREAGGSWNNWKWRSSGDVFKNGAFFVQSGYGSCYPLYFPTQ
SFKVSPGAMVPALTSNAGPLGCIVGKAC
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggcctccctagcccctctcatattattgctcttatgtttcttaacttgtattgctcca
acatttcaagcctattccccagactactacaccaccgccaaaatcactcccaaaaacatc
atgaacgtggtagactcgtgttggtgcacaaagtccgattgggccaccaaccgccgcgcg
ttggccaactgcgcagtaggcttcggcaaagatgcgttgggaggaaaaaatggggctgct
tatgtagtcacgacctcagatgatgacccagtaaaccctgcacccggctcactccgttac
ggggtgatccaaacgcagccattatggatcgtttttgctaaggacatggtcatcacgctc
aaaaatgaactcattatgaatagtttcaagaccatagatggtagaggggctaaagttgaa
attgcgtacggaccatgcataacggtgcagggtgttagccacgttattatacatggatta
agcattcatgattgtaagcccgggaagggtgggaatgttaggagcactcctacacatgta
gggcaacgtctagggagcgacggagatgccatatctgtctttgcttcttcgcatgtttgg
attgaccattgcttcctagctcgtagcacagatggcctccttgatgtcacccatgcttcc
actgccgtcaccatcacaaacaactatttctctcagcatgacaaagtgatgctgcttggt
cacaatgacaattttagtgaagataaaaatatgagagtcacaatagccttcaaccgtttt
ggggctggccttattgaaaggatgccaagggttaggtttgggtatgcgcatgtggccaac
aatatatatgaggagtggaagatgtatgccgtaggaggcagcgccaatccaacaattttc
agtgaagggaactacttcatagctcctgagactccttttgccaaacaggttacaaagaga
gaggctggaggcagttggaataattggaaatggagatcttcaggggatgtgttcaaaaat
ggtgctttttttgttcaatctggatatggaagctgctatccactttattttccaacgcaa
tcgtttaaggtctctccaggagccatggttcctgctttaacctcaaatgcaggtcctctg
ggctgcattgttggcaaagcatgttaa
DBGET
integrated database retrieval system
