Malus sylvestris (European crab apple): 126584816
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Entry
126584816 CDS
T09027
Name
(RefSeq) pre-mRNA-processing factor 39-2
KO
K13217
pre-mRNA-processing factor 39
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126584816
Spliceosome [BR:
msyl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
126584816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_12
Motif
Other DBs
NCBI-GeneID:
126584816
NCBI-ProteinID:
XP_050105127
LinkDB
All DBs
Position
10:37370173..37377575
Genome browser
AA seq
1132 aa
AA seq
DB search
MRTCNCESEPQPMESDSPAFPSDDFDGVSLDFDHWTSLISEMENTYSDDIEKISSVYDSF
LSEFPLCHGYWRRYADHKTRLCSVDKAVEVFELAVQAATYSVPLWVDYCNFSMSVFEDPS
DIRRLFKRGMSFVGKDYSCHTLWDKYIEFEYSQREWSSLAQIYIQALRFPTKKLHQYYES
LNKLAALCEEEMKCQSNSTEDLQSEAVVGSEVPTFYTDHEIALVVKDLLDAENGLDRHKA
LEKYLYTGKQLYQQACRLEGKIGIYESNIRRSYFHVKPLDVGQLENWHSYLDFVEMQGDF
DSAVKLYERCLIPCANYPEFWMRYVDFMEINGGREIANYALDRATQIFLKRVPVIHLFSS
RFKEQTGDVSGARAAFLHCDTESDSCFVKNVMSKANMEKRMGNITAASNIYKEALEMAAE
KKKMHALAILYVHFSRLIYMMTDNADAARDVLMDGIKHLPYSKSLLEELINFASMHGGKR
HLNVVDSIVAKAISPESGVSDGLNAKDAEDISSLYLEFVDLCGTIHEVRKVWTRHVRLFP
FSTRTAFFHQKPTFRKPLELARQMEETLVAMPQQPSGDCSSDSLIVLPLHDTVDGKSLLP
DNHSIESGQEGTDHTLDQDMPSQGSQLEQITSDNLQSSQPENIQETRKLPSPEISREQPT
QPRDDKPEANLPSVGLVKVEQVSSENPEEPRENTTEPKASSVELECQVAEGNETVESSQE
RTDRSDVHREIDNKPEQDLKPLSLESLSLSSQENKNPDSIPSIFHKRETSQETNTSNERK
LESNCKSNEDYSPRNTRALETAGNEVVSPKPMQMPSQPAVNSYGDWRQNNHSGKVRRDSK
FGFRGRLQRNSYQQKPLSPKKYPQAETGRPMPGILGQPPQPLSSQSSQIKQGSQDHNRYQ
AAATPTNVMAPNAWPMQNVQAPNYASSSQPQLPVQSVPPQMSQSSVLGNVQYGMQNSQAY
NEMWQYYYYQQQQLFLLQQQMHQAQQQQQPQQQQQVLLQQYQLQQQQLQQYYAQMQQQQS
YQQQQLQQLQTQQQFSPQFQMQQPQIQQPHPQPQIQQLHQQQQLQEQHLMYLQKHQQPLQ
QQSLMQEQQQNIPSMIQRDNYHHQDQAVMPPNNYGTVASSVSPQTHEECPQK
NT seq
3399 nt
NT seq
+upstream
nt +downstream
nt
atgcggacttgcaattgcgaatcggagcctcagcccatggagtcagactctccagctttt
ccgtcggatgattttgatggagtctcactcgactttgatcactggacttcactcatttcg
gagatggaaaacacatattctgatgacatcgagaaaatatcctctgtttacgactctttc
ttgtccgagtttccgctctgccatggatattggaggaggtatgccgatcacaagacccgc
ttatgcagtgttgacaaggctgttgaagttttcgaactggcggtgcaggcagcaacttac
tctgttcccctttgggtggactactgtaacttcagtatgtctgttttcgaagacccgtct
gatattcgcagattatttaaacgaggcatgtcgtttgttggaaaggattactcatgccat
actctgtgggacaagtacattgagtttgagtattctcagcgggaatggagttcgctggca
cagatttacatccaagctctaagatttcctaccaaaaagttgcaccagtattatgaaagt
ttgaataagttggctgccttgtgtgaagaggagatgaaatgccagagtaattctactgaa
gatttgcaatctgaagcggtggttggtagcgaagtccctacattttatacggatcatgaa
attgcccttgttgtcaaagacctactggatgcagaaaatggcttagacaggcataaagca
ctggaaaagtacttgtatactggaaagcagttgtatcagcaagcatgtcggctagaagga
aaaattggtatttatgagagcaatataaggaggtcttacttccatgtgaagccacttgat
gtgggtcagttggagaattggcattcctatctggattttgttgagatgcaaggggatttt
gattcggctgtaaaactttacgagagatgcttgattccctgtgctaattaccctgagttt
tggatgcgttatgtggatttcatggaaattaacggaggaagagagattgcaaactatgct
cttgaccgagcaacccaaatttttctaaagagagtgccggtgattcatcttttcagttcc
aggtttaaggagcaaacgggagatgtatctggtgcccgtgctgcttttcttcattgcgat
acagaatcagattcttgttttgtgaagaatgttatgtcaaaggctaatatggaaaaacgt
atgggaaatatcacagcagcttccaatatatacaaagaagcgctagaaatggctgcagag
aagaagaagatgcatgcccttgctattttatatgttcatttttctcgacttatatacatg
atgactgataatgcagatgctgccagagatgtcttgatggatggcatcaaacacttacct
tattccaaatcacttctagaggagttgataaatttcgcaagtatgcatggagggaagcga
cacctaaatgtggtagactctattgtcgccaaagcaatctctccagagtcaggtgtatct
gatggtctgaatgcaaaagatgcagaggatatttcaagtttatatttagagtttgttgac
ctttgtggaaccatccatgaagtaagaaaggtgtggactcggcatgtacgactgttccca
ttctctacaaggacagcttttttccatcagaaacctacatttagaaaacctttggaattg
gctagacaaatggaggaaactctggtcgctatgcctcagcagccatctggagattgtagt
tctgactccttgattgtgctcccattgcatgacaccgttgacggcaaatcgttattgcca
gacaatcatagtatcgagtctggccaggaaggaactgatcatacgttggaccaggatatg
ccatctcagggaagtcagcttgagcagattacctccgacaaccttcaatcaagccaacct
gaaaacattcaggaaacacggaaactaccatctccagaaatttcaagagagcaaccaaca
caaccaagagatgataaacccgaagcaaatctgccatctgtaggtttagtaaaagtggaa
caggtatcttcagaaaatcctgaggagcccagagaaaatactactgaaccaaaggcatca
tctgttgaattagaatgtcaagttgctgaagggaatgaaactgtagaatcttcacaagaa
cgcacagacaggagcgatgttcatcgagagattgacaacaagcctgaacaagacctgaag
ccactgtcattggagagtctttctttaagctcccaggagaataaaaatccggattcaata
ccctccatttttcacaagcgtgaaacttctcaagaaaccaatacttcaaatgaaaggaag
ctagagagcaattgcaaatctaatgaagactacagcccaagaaataccagagctttagaa
acagctggaaatgaagtggttagtcctaagccaatgcaaatgccttctcagccagctgta
aatagttatggtgactggcgtcagaataatcattccggtaaagttcgtagagattccaaa
tttggctttcggggacgtctacaaagaaactcatatcagcagaagccactttctcctaaa
aaatacccacaagctgaaacgggtcgtccaatgcctgggattctaggtcaaccccctcaa
cctttgtcttcacagagctcgcaaattaagcaaggcagccaggatcataatcgatatcaa
gcagcagccactcccactaatgtaatggcacctaatgcttggcctatgcagaatgtacaa
gcaccaaattatgcctcttcatctcagcctcagttgcctgtccaatctgttcctccacag
atgtcccaatcatccgttttaggcaacgtgcagtatggcatgcagaacagccaagcatat
aatgagatgtggcagtattattactaccagcagcagcagctgtttcttctacaacaacag
atgcatcaagcacagcagcagcagcagccgcaacagcagcagcaggtcttgttgcaacag
tatcagcttcagcagcaacaacttcaacaatattatgctcagatgcaacagcaacaatct
tatcaacagcaacaattgcaacaactacagacgcaacagcaatttagtccgcaattccag
atgcaacagccgcaaattcagcaacctcatccgcagccgcaaattcagcaacttcatcaa
caacagcaacttcaggaacaacatctgatgtacttgcagaaacatcagcagccattacaa
caacagtcccttatgcaggagcagcagcaaaatatcccgtccatgattcagcgggacaac
taccaccatcaggaccaagccgtcatgccaccaaataattatggaacagttgcatcttcc
gtatctccccaaactcatgaagaatgtccgcagaagtga
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