Malus sylvestris (European crab apple): 126584840
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Entry
126584840 CDS
T09027
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04120
Ubiquitin mediated proteolysis
msyl04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
126584840
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
126584840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126584840
Enzymes [BR:
msyl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
126584840
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
126584840
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
126584840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
WDR55
Beta-prop_RIG_2nd
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR19_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML
zf-C3HC4_2
Beta-prop_TEP1_C
Beta-prop_HPS5
zf-C3HC4
WD40_RFWD3
zf-RING_2
WD40_like
Beta-prop_DCAF12
zf-C3HC4_3
Beta-prop_WDR75_1st
zf-RING_6
Beta-prop_WDR35_TULP_N
zf-RING_UBOX
Beta-prop_SCAP
zf-RING_5
Vps5
FAM92
U-box
Beta-prop_NUP159_NUP214
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
126584840
NCBI-ProteinID:
XP_050105164
LinkDB
All DBs
Position
10:complement(42322290..42327105)
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AA seq
646 aa
AA seq
DB search
MGESSMGGALVPTVKSEYFQDSAAETAPFDDEPDKDMKCPICMQIIRDACLTACGHSFCH
VCISTHLRIKSDCPCCASSLTPASIFPNFLLDKLLKNVLDSRMAKNFELLSRKLNKGCEI
SIKELDGLLSLLEEKRRKMELQEAENSMDIMLSFLHCLRRQKLQELNELEADLRYIKEDI
TAVERHRLELCSWEQERSAKLRMLVPGDQHGNGIACSTQYVQDRMSSFNLQNKRADVNGQ
SSSKLLQLKDAYGRSEMQCVTTPGVLSVARKRRVHSQFNDLQDCYLQKRRNWNRQEEDTN
AMDIEGYNPGLEDFQSVLASFTQYSRLRVVAELSHGDLFHSANIVSSIEFDRDEELFATA
GVSRCIKVFEFSSVVNEPTDIHCPIVEISSRSKLSCLSWNKYTRNHIASSDYEGVVTVWD
VNTCQSMMEYEEHEKRAWSVDFSCTDPSMLVSGSDDCKVKIWCTKQEPSVLNIDMKANIC
SVKYNPGSSFFVAVGSADHHIHYYDLRNISQPLHVFRGHRKAVSYVKFLSNNELASASTD
STLRLWDVKENLPLCMYRGHMNEKNFVGLAVNNEYIACGSETNELFVYHKAISKPMTWHR
FGSSDLGDNDDDPGPHFISAVCWKRDSPMILTANSQGTIKVLVLAA
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgggagagagctcaatgggtggtgcgctggtccccaccgtgaaatccgaatacttccag
gactccgccgccgaaacggcgccgtttgacgacgagccggacaaggacatgaagtgtccg
atatgcatgcagatcatcagagacgcctgcctcaccgcctgcggccatagtttctgccac
gtctgcatttcaactcacctccgcatcaagagcgattgcccttgctgcgctagctccctc
acccccgccagcattttccccaatttcttgctcgacaagttgctgaaaaatgttttggat
tctcggatggcgaagaattttgaacttcttagtcggaaattgaacaagggctgcgagatt
tcgatcaaagagctggacggccttttgtccttgctggaagagaagaggagaaaaatggag
ctacaagaagccgagaacagcatggacatcatgcttagcttcttacattgtctgagaagg
caaaagcttcaagagctcaatgagttagaggccgatctcaggtacatcaaggaggacatt
actgccgttgagaggcatagactagaactatgcagctgggaacaggagaggtccgcaaag
ctgagaatgcttgttcccggtgatcagcatggcaacggcattgcctgcagcactcaatat
gtgcaagaccggatgagttctttcaacctacagaacaagagagctgatgtaaacgggcaa
tcaagctccaagctgctccaactgaaggatgcttatggaaggtctgaaatgcagtgtgtt
acaacaccaggagtactatcagtagcaagaaaaaggcgtgtccattcgcagtttaatgat
ctacaagactgctacttgcaaaagcgacgaaattggaacagacaggaagaggacacaaac
gccatggacatagaaggttacaatccaggccttgaagattttcaatctgtgcttgcaagc
tttacacaatacagtcgattgagagtcgttgctgaactgagtcacggtgatctttttcac
tctgctaatattgtgtcaagtatagaatttgatcgtgatgaagagctctttgctactgct
ggagtttcacggtgcatcaaggtttttgaattttcctcggtggttaacgaaccaaccgat
atccactgtcctattgtggagatatcctcacgatccaaacttagttgcttgagctggaat
aagtacactagaaaccatattgctagtagtgactacgagggggtagtaactgtttgggat
gtaaatacttgtcagagtatgatggaatatgaggagcatgaaaagcgagcttggagcgtt
gatttttcatgcaccgatccttcaatgcttgtgtccggaagtgatgactgcaaggtcaaa
atttggtgcacaaagcaagaaccaagtgttcttaacatcgacatgaaggcaaatatatgt
tctgtcaagtataatcctggatccagctttttcgtggcagttggctctgctgaccatcac
attcattattatgacttgagaaacatcagccaaccactgcacgtgttccgtgggcataga
aaagctgtttcgtatgtaaaattcttgtctaacaacgaacttgcttctgcatccactgac
agcacactgcggttgtgggacgtaaaggaaaacttgcccttgtgcatgtacagaggccac
atgaacgagaagaactttgtaggtcttgcagtaaataatgaatacattgcttgtggcagc
gagacaaatgaactgttcgtataccataaggccatctcgaaacctatgacttggcacaga
tttggctcttcggatttaggcgataatgacgacgatccaggaccacactttatcagtgcg
gtatgttggaagagggatagccctatgatattgactgcaaacagtcaaggaacgattaaa
gtgctcgtacttgcagcctga
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