Malus sylvestris (European crab apple): 126585070
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Entry
126585070 CDS
T09027
Name
(RefSeq) cleavage stimulating factor 64-like isoform X1
KO
K14407
cleavage stimulation factor subunit 2
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126585070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126585070
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
126585070
U7-dependent histone pre-mRNA processing factors
126585070
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
CSTF2_hinge
CSTF_C
RRM_7
partial_CstF
RRM_10
Motif
Other DBs
NCBI-GeneID:
126585070
NCBI-ProteinID:
XP_050105415
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All DBs
Position
10:5039089..5045448
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AA seq
534 aa
AA seq
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MAASQHRCVFVGNIPYDATEEQLVEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEET
ALSARRNLQGYEINGRQLRVDFAENDKGTDRSRDQGRGGPGLTANVDPQKQGGGPSVHAE
SLQHQPIGLHKAITAATAMAGALGGAQSGLQNQLASPNDPLTLHLAKMSRGQLNQIMSEL
KVIATQNKELACQLLLARPQLPKALFQAQIMLGMVSPQMLQMPNIRQASGHTSQPPFNEA
QQAQSPALQTHAELPPPATNKLQSGLVPNLQEGQFAAAPQNPLGRSQFSAPQQQPMQPRM
QLPQHVNHHFLQQAPLLGQSGVPTFPPIHPQSSSGLSFRPQTQLMNSSSSNQKMQPPLIQ
HPGQVGRANFGHNTRMVNPIATVQHSSLPRPLSEASFQPGPSMSSGISQAINKDAERSFQ
AVNDSVESVKRPSKLMKLDDGSSSTLSRVGLNVPLANGSVLPHALPAKPVHKSEEVQRSE
KQISQSQLPPGVESALLQQVLSLTPEKLSSLSPEQQQEVIKLQQMLRRDQIQPS
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggccgcttctcagcaccgctgcgtttttgtggggaatataccttatgatgccactgag
gaacagcttgtagaaatctgccaggaggttggtcctgttgtatctttcagactagttatt
gatagagagactggaaaaccaaagggttacgggttttgtgagtacaaggatgaggagact
gctctaagtgctcgtcgtaatcttcagggttatgagatcaatggcaggcaattacgagtg
gattttgctgaaaatgacaaaggcactgatagaagtcgagatcagggtcgtggtggacca
ggactgactgctaatgttgaccctcaaaagcaaggaggggggccatctgttcatgcagaa
tctcttcaacatcagccaattggtctccataaagctattactgcagctactgccatggca
ggagctctaggtggtgctcagtctggtttgcagaatcaattggcatcaccaaatgatccc
ttgacacttcatctggccaaaatgtctaggggtcagttgaatcaaataatgtcagagctc
aaggtaattgctacacaaaacaaagagctagcttgtcaactattgcttgcaaggccacag
ttgccaaaagccctcttccaggcacaaataatgctcggaatggtgagcccacaaatgttg
cagatgccaaatatcaggcaagcttcaggtcatacctcacagcctccattcaacgaggcc
cagcaggctcagtcacctgcacttcaaacccacgctgagttgccccctcctgcaactaat
aagttgcagtctgggttggtgcccaatctgcaagaaggccaatttgcagctgcacctcaa
aatccattgggtagaagccagttttctgcaccccaacagcaacccatgcagcctcgaatg
cagcttccacaacatgtaaaccaccactttttgcaacaggccccattgctggggcaatct
ggagttccaacatttcctcccatacaccctcagtcttcaagtggtttgtcctttcgaccc
caaactcagcttatgaattcttctagttcaaaccagaaaatgcagcctcctctgatacag
catccgggtcaggttggacgtgccaactttgggcataacactcggatggttaatccaatt
gctaccgtacagcattcttctttacctcgtcctctatctgaagccagctttcagcctggt
ccctcaatgtcttcgggaatctcacaggcaatcaacaaggatgctgaaagatcttttcaa
gcggttaacgattcagtagaatcagttaagcgcccttcaaagctaatgaaattggatgat
ggaagtagtagcactttgtcaagagtgggtcttaatgtgcctcttgccaacggatccgta
ttgccccatgctttgcctgcgaagcctgttcataagtcagaagaagtacagcgctctgag
aaacagatttctcagtctcagcttccacctggagtagagtctgctctactacaacaagtt
ttgagcttaacacctgaaaaactgagttcattgtctccggaacagcaacaagaagtaata
aagctccaacagatgcttcggcgagatcagattcagccatcgtag
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