Malus sylvestris (European crab apple): 126585088
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Entry
126585088 CDS
T09027
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126585088
03036 Chromosome and associated proteins [BR:
msyl03036
]
126585088
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
126585088
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
126585088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
SPT6_acidic
Spt6_S1
HTH_44
HHH_9
Tex_central_region
SH2
Tex_N
MRP-S34
Motif
Other DBs
NCBI-GeneID:
126585088
NCBI-ProteinID:
XP_050105441
LinkDB
All DBs
Position
10:complement(29052626..29060284)
Genome browser
AA seq
1562 aa
AA seq
DB search
MGKGVVSDEEDEMIHGEDEDRSLVDDVAVDDSDGGGDGDDVEDEEEEGEGLDEYEKDDFL
VDDVEDEEEEEEGRADSDEEERQKKKKKKKREEYVLDDDDYDLLEDNNVYAFRRKSQGKF
KRLKKAQRNSEGVSDGKTIEQSLFDGEEGYPLEDIAEEEEPEAEADGDVGEDDMADFIVD
DEEFDVTGSPVRQGKVKRRKSTKAPEVPSSSLQEAHDIFGDPQQLIELRKQGLDSGEWRN
MRIKDQFEPSVLSEKYMTDKDEQIQALDIPERIQIYETCTGSPPLNAKRIDDESTWIYDQ
LTSGIIPFYGMTDLGKSISRDDIRNFLELHHVQMFDIPFIAMYRKEECLSLLKDPKHLEL
EDENQDKNKNKPELKWHRLLWTIQDLDRKWLLLQKRKSALKSYYKKRFEVESQCISEETR
LTLNQQLFESVMKSLEAAKSEREVDDADAKFNLHFPPGEGGVDAGQYKRPKRKSLYSICI
KAGLWHAARKFGYSSEQFGLQLSLENMRMDELEDAKETPEEMASTFTCAMFDTPQAVLKG
ARHMAAVEISWEPCVRKYVRSNYLDITEISTNPTLEGNVAIDASHQFAGVKWLKRKPLNR
FEGAQWLLIQKAEEEKLLQVTIQLPEDRLNKLISDFNEYYLSDGVSKSAQLWNEQRKLIL
QDALFNFLLPSIEKEARSLLTSRAKHWLRVEYGNALWNQVSVGPYQRKENDGSSNNEAAP
KVMACFWGPGNPATTFVMLDSSGEVLDVLYAGALSLRFLNANDEKRKKDEQERILKFMID
HQPHVVVLGGVNLSCTRLKDDIYEIIYKMVEEHPRDVGADMDGLSIVHGDESLARLYENS
RISSDQLPMQLQSGIVKKAVALGRYLQNPLAMVATLCGPGREILSWKICALEHFLTPDEK
YEVVEQVMVDVTNQVGIDLNLAISHEWLFAPLQFISGLGPRKAASLQKMLVGFGEAVYTR
KDMSKDTSNPPTLKDKLKRKYGLDNRVFINACGFLRVRLSGSAGSSYTDIDLLDDTRINP
ESYQLAEQLAKDVYDVEGRNDDDDVVGFVREHPKYLKNIDVEEYAKSKRCEKKIITLYDI
RRELIQGFQDWRKKYEEPTQDEEFYMITGETEDTLAEGKIVQVTVRRVQADRAQLALECG
LTGILMKEDYQPDDWRGISDLSDRLNEGDILTCKIKSIQKKSYRVFLAYRESEIRNDRSH
IQNLDTYYQEDWKSLQSEQEKAQKSMQLEKKNFNPRMIVHPRFQNISADESMRLLSDKDP
GESIFRPSSRGPSHLSLTLKIYDGVYAHKDIVEGGKEKKDITSILRIGKTLTIGEDTFED
LDEVVDRYVDPLVAQLKAMLNYRKFRRGTKAEVDALLKIEKLENPARIVYSFGVSHEYPG
TIILTYIRSSNPHHELVGMYPKGFKFRKRMFKKIDQLVEYFQRHVNDPPQELGPPIRSVA
AIVPMRSPATRGSSGASVGSGWGGSTNDGGRRSQTSGRDRSSTSSSRTGRNDMGNFPGAK
VQNSPGREAFPGGWGAGGSGSGSGWGGKSNDGWGQGSGGAYGDVVDPRASGWDSDPKRRR
FR
NT seq
4689 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaaggtgttgtctccgacgaggaagatgagatgattcatggagaggacgaggac
aggtcgcttgttgacgacgttgcagtggatgactctgacggtggcggtgacggtgacgac
gtggaagatgaagaggaggagggcgaaggtctggatgaatatgagaaggatgattttcta
gtggatgatgtcgaggatgaagaggaggaggaagaagggagagcggacagtgatgaagaa
gaaagacagaagaagaagaaaaaaaagaaaagggaggagtatgtccttgatgacgatgac
tatgatctcctggaggacaataatgtgtatgccttccgcagaaagtctcaggggaaattt
aagcgactgaaaaaagctcagaggaactctgagggggtatctgatgggaagacgattgag
caatctttatttgatggtgaagaaggttatccgcttgaggacattgcagaagaggaggaa
ccagaagcagaagccgatggagatgttggtgaagatgatatggcagactttattgtcgat
gatgaagagtttgatgtgactggatctccagtgagacaagggaaggttaagagaagaaaa
tctacaaaggcaccagaagtcccatcatcttctttgcaggaagcacatgatatatttggt
gatcctcaacaactgatagaacttcgaaagcaaggtttggattccggggaatggaggaat
atgaggattaaagatcagtttgaacccagtgttctttctgaaaagtatatgacagacaag
gatgaacagattcaggcgcttgatattccggaaagaattcagatatatgagacatgcact
ggttctcctccactgaatgcaaaacgtatagatgatgagagtacctggatatatgatcaa
cttacgagtggtataatacccttctatggcatgacagacttggggaaatctataagcagg
gatgacatcagaaattttttggagttgcaccatgtgcaaatgttcgatattccctttatt
gctatgtatcggaaagaggagtgtctaagcttattgaaagatcccaaacaccttgaattg
gaagacgaaaaccaggacaaaaataagaacaaacctgagctaaagtggcacagattactt
tggacgattcaggacttggacagaaaatggctgctgcttcagaagcgaaaaagtgcattg
aaatcatactacaagaagcggtttgaggtagaatctcaatgtatatctgaggagaccaga
ctcacattgaatcagcagctttttgaatcagttatgaagtcacttgaggctgcaaaatca
gagagagaagttgatgatgctgatgccaagtttaacttgcattttcctccaggcgaggga
ggtgtggatgcaggacaatataagaggccgaagaggaaatcactttatagtatctgcatc
aaggctggcctgtggcatgctgcaagaaagttcggctacagctctgagcaatttggactg
caattatcactagaaaatatgagaatggatgagttggaggatgctaaggagacaccagag
gagatggcttccacctttacatgtgcaatgttcgatacacctcaagccgtgctcaaagga
gctaggcatatggcagctgttgagataagttgggagccatgtgtcaggaagtatgttcga
agcaattacttggatataactgagatatcaacaaacccaacacttgaaggaaatgttgca
atagatgcttctcatcagtttgcaggggtgaagtggctgaaaagaaagccattaaataga
ttcgagggcgcgcaatggctgcttatccagaaggctgaagaggagaagcttcttcaagtt
actattcagctgccggaagacagactaaataagttgatcagcgactttaatgagtactat
cttagtgatggtgttagtaaatctgcacaactgtggaatgagcagcggaagctgatattg
caggatgcactttttaatttccttctaccttcaattgagaaagaagcaagatccttattg
actagtagagcaaaacactggttacgtgtggaatacggaaatgctttgtggaatcaagtc
tctgtgggaccttatcaacggaaggaaaatgatggtagctcaaacaatgaagctgcaccg
aaggtcatggcttgcttttggggacctggtaacccagcaaccacttttgtgatgttagat
tcatctggggaggtgctagatgtactttatgccggggccctctctttacgcttcctcaat
gctaatgacgagaagcgtaaaaaggatgaacaagaacgcattttgaagttcatgattgat
catcaaccacacgtcgtcgtcctagggggtgttaacttgtcttgtactcgcctgaaggac
gatatctatgagataatttataagatggtggaggagcatccaagagatgttggggctgat
atggatggcctaagcattgtacatggggatgaatctttggctcgcctatatgaaaattct
cggatttcatctgatcagctaccaatgcagctgcagtcaggcattgtcaagaaggctgtg
gctcttgggcgttatcttcaaaatccattggccatggttgccacgctttgtggaccagga
cgagagatcttatcttggaaaatctgcgctcttgagcactttctcaccccagatgagaag
tatgaggtggttgaacaggtcatggtagatgttacaaaccaggtaggcattgacctaaat
ttggctataagccacgaatggttatttgcaccacttcaattcatttctggactcggacct
agaaaggcagcctcgttgcagaagatgttggtaggctttggtgaagcagtatatacacga
aaggacatgtcaaaggacacgtcaaatccaccaacactaaaggacaagttaaagagaaaa
tacgggcttgataatagggtttttattaatgcttgtggtttcctgcgtgttcggctgagt
gggtcggctggtagcagctacaccgatattgatctgctggatgataccagaatcaatccg
gaatcttatcaacttgcagaacaattggcgaaagatgtttatgatgtggaaggtcgcaat
gatgatgatgatgtggtggggttcgtcagggagcatcctaaatatctaaagaacatcgat
gttgaagaatatgctaaaagcaaacggtgtgagaaaaagataattacattgtatgatata
aggagagaattaatacagggttttcaggactggcgtaaaaaatatgaagaaccaacccag
gatgaagaattctacatgattacaggtgaaacggaggatacccttgccgaaggaaaaatt
gtgcaggtcacagttcgcagggtgcaagctgatcgtgcacaacttgctcttgaatgtgga
ttgactggtattcttatgaaagaagactatcagccagatgattggaggggtatttctgac
ttgtctgatagactgaatgagggtgatattctcacttgcaagatcaaatcaattcaaaag
aaaagttaccgggtgttcctagcttatagagagagtgagattagaaatgaccgatctcac
attcagaatcttgatacctattaccaagaagactggaaaagtctacagagtgagcaagaa
aaagctcagaagagtatgcagctggaaaagaagaatttcaatccaaggatgatcgttcat
cctcgcttccagaatatatctgcagatgaatcgatgaggttattgtctgataaggatcct
ggggaaagcatttttcgtcctagttcccgtgggccttctcatttatccttaaccctcaag
atttatgatggagtttatgctcataaagacatagttgaaggtggaaaggaaaagaaggac
attacgagcatactccgtattggaaagaccctgaccattggggaggacacttttgaggat
ttggacgaggtggtggatcgttatgttgatccattagtggctcagttgaaggcaatgcta
aactatcgaaagttcaggaggggaacaaaggcagaggttgatgctcttttgaagattgag
aaattggagaaccccgcgcggatagtttatagttttggggtatcacatgaatatccaggc
acgataattctgacctatattcggagttcaaatccacaccacgagttagttggaatgtat
ccaaagggattcaagttcagaaaacggatgtttaagaaaattgatcagcttgtagagtat
tttcaacgccatgtcaatgaccctccgcaagagttagggccaccaattagatcagttgct
gctattgtgccaatgcgaagccctgcaactcggggttcttcaggggcatccgtgggcagt
ggttggggtggttcaaccaatgatggtgggcggagaagccagacttctggcagggatcga
tcatctacatcgagttcacgaacaggccgaaatgatatgggcaactttccgggtgcaaag
gttcaaaactcaccgggaagggaagctttcccaggtggctggggtgccggtggaagtggc
agtggcagtggctggggtggcaagagcaatgatggatggggtcaaggaagtggtggtgca
tatggagatgttgttgatcctagggcttcaggctgggattctgacccaaaacgaagaagg
ttcagataa
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integrated database retrieval system
