Malus sylvestris (European crab apple): 126585219
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Entry
126585219 CDS
T09027
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126585219
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126585219
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126585219
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126585219
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
126585219
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
Torus
zf-CCCH_12
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
126585219
NCBI-ProteinID:
XP_050105586
LinkDB
All DBs
Position
10:36209422..36215720
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AA seq
667 aa
AA seq
DB search
MEDSDGGLNFDFEGGLDAPATVSASAGPANTVPTSNYSVMQSDSAVTGLGANQAAAAPQP
NQNANRTGGRSYRQTVCRHWLRSLCMKGDACGFLHQYDKSRMPVCRFFRLYGECREQDCV
YKHTNEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQHLTSYNYNNSSKF
YQQRNAGFPQQGDKHQPAQGPNNFVGKPTTAESGNVQQQQQQQQQLQQTQQHVGPTQTQT
LPNGLANQANRSALPLPQGTSRYFIVKSCNRENLELSVQQGLWATQRSNESKLNEAFDSA
ENVILIFSVNRTRHFQGCAKMMSRIGGSVGGGNWKYAHGTAHYGRNFSVKWLKLCELSFH
KTRHLRNPYNENLPVKISRDCQELELSVGEQLASLLYLEPDSELMAISIAAESKREEEKA
KGVNPENGGENPDIVPFEDNEEEEEEESEDEEDSFGQVPGAGNDGRGRGRGGGVMWPPHM
ALPRGGRPMPGMQGFPPGMMGHDAMPYVPDGFVMPNPFGMAPRGFNPYGPRFSGDFTVPN
PGMMFRGRPQQPGFPPGGFGIMGPGRAPFMGGIHPGRGGRPTGMSPMFPPPPSSQNPNRM
PKRDPRGASTDRKGQDMSGPDDETHYGAGNSSRNDDSESEDEAPRRSRHGDGKKKRRDSE
GDATSEH
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atggaggactccgacggaggcctcaacttcgacttcgagggaggcctcgatgcacccgcc
accgtctcggcctccgcgggccccgccaatacggtcccaacttcgaattattccgtgatg
caatccgactccgccgttaccgggctgggtgccaatcaggccgctgcggcgccgcagccc
aatcagaatgcgaaccggacaggtgggcggagctaccgacaaacggtgtgtcgtcactgg
ctgcgcagcctttgtatgaagggcgatgcctgtgggttcctccaccaatacgacaagtcg
cggatgcccgtgtgccgcttcttccggttgtacggcgagtgccgcgagcaggactgcgtg
tacaagcacactaacgaggacatcaaagagtgtaatatgtacaagttgggtttttgtcca
aatggtcctgattgccggtatagacacgcaaagctgcctggacctccacctccagtggaa
gaagtccttcagaagatccagcatttgacttcttacaattataacaactcaagtaagttc
tatcaacaaaggaatgctggttttccccaacaaggagataagcatcagcctgcacaagga
cccaacaattttgtgggaaaacctactacagcagagtctggcaatgtccagcagcagcaa
cagcaacagcaacagcttcaacaaacccaacaacatgttggccccacacagacacaaact
cttcccaatggcttagctaatcaggcaaatagaagcgcgttgcctttgcctcaaggaaca
tctaggtattttattgttaaaagttgcaaccgagaaaatttggaattatctgtacaacaa
ggattatgggcaactcagaggagcaacgagtccaaacttaatgaagcttttgactctgct
gaaaatgtgattttaattttctcagtcaaccggactcgacatttccagggttgtgcaaag
atgatgtccagaattggtgggtctgttggtggagggaattggaaatatgcacatggaacc
gcacattatgggcgaaatttctctgtcaaatggttaaagctatgtgaactgtcctttcac
aaaactcgtcatttgaggaacccctacaatgagaacctaccagtgaagataagtagagat
tgtcaagagctagagctctccgtcggtgagcagttggcatccttgctttatcttgagcca
gatagtgaacttatggcaatttcgattgcggcagaatcaaaacgcgaagaagaaaaagca
aagggagtcaatccagagaatggtggtgagaatccagacattgtcccatttgaggacaat
gaagaggaggaagaggaagaaagtgaagatgaggaagatagcttcggtcaagttcccgga
gcaggaaatgatggcagaggaaggggcagaggaggaggagtcatgtggcctcctcacatg
gctctaccaagaggtggcagacctatgcctggtatgcagggttttcccccaggaatgatg
ggtcatgatgcaatgccctatgtacctgacggatttgtaatgccaaatccgttcggtatg
gcccctcggggtttcaatccgtatggtcccaggttttcaggtgattttacagtgcccaac
cctggcatgatgtttcgtgggagaccacaacaacctggatttccacccggtgggtttggg
attatgggtcctggacgtgcacccttcatgggagggatacatccaggccgaggtggtcgg
ccaacaggtatgtctccaatgtttccaccaccaccatcatctcaaaaccctaaccggatg
ccgaagagagatccaaggggagcttccactgatcggaagggacaagatatgtcaggtcca
gatgatgagacacattatggtgctggaaacagctctagaaatgatgatagcgaaagtgag
gatgaggccccgaggcggtcgaggcatggagatggaaagaagaaacggcgagactcggaa
ggagatgcgacctccgagcactag
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