Malus sylvestris (European crab apple): 126585384
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Entry
126585384 CDS
T09027
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
126585384
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
msyl03036
]
126585384
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
126585384
SWR1 complex
126585384
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
Motif
Other DBs
NCBI-GeneID:
126585384
NCBI-ProteinID:
XP_050105751
LinkDB
All DBs
Position
10:complement(32722955..32736035)
Genome browser
AA seq
2159 aa
AA seq
DB search
MASKGPRSKLDHEPRPKRQKALETASEPRRPKAHWDHVLEEMIWLSKDFESERKWKLAQA
KKVALRASKGMLDQATRGERKLKEEEQRLKKIAVNISKDVKKFWLKIEKLVLYKHQMELD
EKKKKALDKQLEFLLGQTERYSTMLAENLGDSYKPVQQYPTQGQPSIQFKEMDKNDTNKS
TELNAEPDTERADIDVDDDDYDVQSEDRTEDDENTIEEDEALFTEQERKEELAALQNEVD
LPLGELLKQYPMEKDGLSVSPESSTEKGEDATEMTSGDDGAEMTSVEEEHGMSPGKNGDD
AELILLGKKDDMSPGKDEDRKEMTSVEEERVKQDEDGTKMTSVGEEKGMCSEKVEDAAEI
TSVGEEPGEKSDLFVSDITEKINSDVVTGRRCVQSNGGLSISKGHLSEIEINEDKNHSEA
PVQLAKGQMRYDFNDEHEDGDFILAAGEEQDDETTLSEEEELEKADTNDRMDEIALLQKE
SEVPLQELLARYKKDLNSDEVADGESEYGSALSEDFVDSSSLEDVEPKQDDYMDEDIDSG
EHQPALDSPTEEHSASITKISEGGKDSENRLEDAAAAARSAQPTGNTFSTTNVRTKFPFL
LKFPLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIV
VPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHICITTYRLVIQDSK
VFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLM
PHVFQSHQEFKDWFSNPISGMVEGQERVNKEVLDRLHNVLRPFILRRLKRDVEKQLPMKH
EHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIV
SSYDMGGIYTQLSSSVCSILLPGPFSAVDLKGLGFLFTHLDFSMNSWESDEVKALATPSN
SIKEHVELINLEDIGGLKHRKKLHGTNIFEEIHKAIMEERLRQAKEHAAAVAWWNSLRCN
RKPIYSTSLRELVTVRHPVFDIHCHKANPISYMHSSKLADIVLSPVERFQKTIDLVESFL
FAIPAARAPPPVCWCNKSVSSVFLHPAYKQKCSEYLSPLLSPFRPAIVRRQVYFPDRRLI
QFDCGKLQELAVLLRKLKSEGHRALIFTQMTKMLDTLEAFINLYGYTYMRLDGSTPPEER
QTLMQRFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQT
REVNIYRLISQSTIEENILKKANQKRALDDLVIQSGGYNTEFFKKLDPMELFSGLRALPV
KNMQKEKNHNTTEVSLSNADLEAALKHAEDEADYMALKKVEQEEAVDNQEFTEEAIVRLE
DDELVNEDDVKIDEPADRGGVVASSSKENGVDPNEGRAHTVACREDDVDMMADVKQMAAA
AAAAGQEISSFGDQLRPIDRYAIRFLELWDPIIDKKAVESQARFEETEWELDRIEKYKEE
MEAEIDEDEEPLVYETWDADFATEAYRQQVEALAQIQLEELEYEAKLKEDEAEENCDSMK
NEMPIDPKPKTKKKSKKAKFKSLKKQSLASELKPLKGELQAEPMSIDEDSLSHEMVTYSD
TESPRSSVQRKRKKAEVIPVGEEKSSKKSKKLKKSTLEICPTEFDTNLSTMDHDEVTESK
PCESMVEFDHKPASRSKMGGKISITSMPVKRILLIKPEKLKKGNIWSRDCIPSPDFWLSQ
EDAMLCAVVHEYGPHWSLVSDVLYGMTAGGFYRGRYRHPIHCCERFRELIQRYVLSTPDN
PNYEKVNNIGSGKALLKVTEDNIRMLLNVAADQPNTEFLIQKHFTALLSAVWKVTSHKDR
RKNLPSSQNGLYFGGSIFSPSNQKSQTPMMERTERMKLTNFGHGTKLVAAALNDASNRQG
TKLVPAALNDASSRCDNDTVFRPNLGKDSSIESERLDITLEFQGAKDDTIDELPSVLNLS
ISASDRFPSLNKATEDHHLRKSSNVNLAENRFRTATRTCNEDAMGWASSVFPTNDLRSRS
MSKLTTTGKHKLVFSDSVRPSKSKIRKSSVEHGEMRNFVSEQVLPPFPMAAPLNPNPRFD
LNTPIDEDAGIYELESDSFSCLDESLLEMETFGVLPHEYVPGLIGGLDDEQLPEYTDIG
NT seq
6480 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaaaggtccaaggtccaagcttgatcatgaacccagacctaagcgccaaaag
gcccttgaaactgcaagtgaacctcgtcggccaaaagctcactgggatcatgttttagaa
gagatgatatggctttcaaaggatttcgagtcagagagaaaatggaaattagctcaggcg
aagaaagttgctttaagagccagcaagggcatgctagatcaggctacaaggggagaaagg
aaattgaaggaggaagagcaacggctaaagaagattgcagtcaatatatcgaaggatgtg
aagaaattctggctgaaaatagaaaagctggtgctttacaagcatcagatggaacttgat
gagaaaaagaaaaaggcacttgataagcagcttgagttccttctaggtcaaactgagagg
tactcaacaatgttggcagaaaatcttggggacagctacaagcctgttcagcaatatcct
acacaaggtcaaccaagtatccaattcaaagagatggacaaaaatgatactaacaaatca
accgaattgaatgccgaacctgacacagaaagagcagacattgacgttgatgatgatgat
tatgacgtacagtctgaagatagaactgaggatgatgagaacactattgaggaagatgag
gctctttttactgaacaagaaaggaaggaagagttggctgctttacagaatgaagtagat
cttccacttggggagctactcaaacaatatcctatggagaaagatggactttcagttagc
ccagaaagtagtacagaaaagggtgaagatgctacagaaatgacatcaggagacgatgga
gcagaaatgacctcagtagaggaagagcatggtatgtctcccggtaagaatggggacgat
gcagaactgatcttgttggggaaaaaggatgatatgtctccagggaaggatgaagatcgc
aaagaaatgacttcggtggaggaagagcgtgttaaacaggatgaagatggcacaaaaatg
acctcagttggagaagagaagggtatgtgttcagaaaaggttgaagatgccgcagaaata
acctcagtgggggaggaacctggtgaaaaaagcgatctttttgtgtccgatataaccgag
aaaatcaactcagatgttgtcactggtcgtcgttgtgtgcaaagtaatggcggtttgtcc
atttcaaaaggccatttatcagagattgagataaatgaagataaaaatcattcagaagcg
cctgtacagcttgccaaaggacagatgcgatatgattttaatgatgaacatgaagatggt
gacttcattcttgctgctggagaagaacaggatgatgagacaaccttatcagaggaggag
gaactggaaaaagcagataccaatgatcgcatggatgagattgccttactgcagaaggag
agtgaagttcctttacaggaactgcttgcaaggtataaaaaggatttaaacagtgatgaa
gttgcagatggtgaatctgaatatggctctgctctatcagaggattttgtggattcttca
tctcttgaagacgttgaaccaaagcaagatgattatatggatgaagatattgactctggt
gaacaccagccagctcttgattctcctactgaagaacacagtgcaagtataactaagatt
tcagaagggggaaaagacagtgaaaacagacttgaggatgcggctgctgctgctagatct
gcacagccaactggaaacaccttctccacaaccaatgtccgcacaaagttcccctttctt
cttaagttccctctacgtgagtatcagcatattggcttggattggcttgtaacgatgtat
gagaaaagactgaatgggattctagccgacgagatggggcttgggaagacaatcatgaca
attgctttgcttgcacacctagcatgtgaaaagggaatatggggtcctcatcttattgtg
gtcccaactagtgtaatgcttaattgggagactgagtttcttaaatggtgtccagctttc
aaaatcctaacttattttggaagtgctaaagagcgcaagttgaaaaggcaaggctggttg
aaacccaactcatttcatatatgcataacaacatacagactggttattcaagattcaaaa
gttttcaagcggaagaagtggaagtacttgattttagatgaagcccatctgattaaaaat
tggaagtctcagaggtggcagactcttttgaacttcaattccaaacggcgcattttgtta
actggtactcctctgcaaaatgatctcatggaactttggtctctaatgcatttcttgatg
ccccatgtatttcagtctcatcaggaattcaaggattggttctctaatccaatatcaggg
atggttgaggggcaagaaagagtaaataaagaagttcttgatcgtctgcataatgttctt
cgtccattcattctccgtcgtttaaaacgagatgtggagaagcagctccctatgaaacat
gagcatgtcatatactgtagactctccaagaggcagcgtaacttgtatgaagacttcatt
gctagctccgaaacacaagcaactcttgcaagtgccaatttttttggaatgataagtatt
ataatgcaacttcgtaaagtatgcaatcatcctgacttatttgaaggtcgtccaattgtc
agttcctatgatatggggggtatttacacacaattgagttcttcagtatgttcaattctt
ttacctggacccttttctgcggtagaccttaagggtttggggtttttatttactcattta
gatttttcaatgaattcttgggagagtgatgaagttaaagctcttgctacgccatcaaat
tcaatcaaggagcatgttgaactgattaatcttgaagatattggtggacttaaacatcgc
aagaagttgcatggtaccaatatttttgaagagattcataaagcaattatggaggagaga
ctaagacaagcaaaggaacatgctgcagctgttgcatggtggaattccttgaggtgcaat
aggaaacccatatattcaacaagcctaagggagcttgttacagtaagacatcctgttttt
gatattcattgtcacaaggctaatcctatatcctacatgcactcctcaaagcttgctgat
atagtcctttcaccagtggaacgcttccagaaaacgattgacctggttgaaagcttcttg
tttgcaatccctgctgcgcgagcgccaccacctgtatgctggtgcaataagtctgtaagt
tctgtgtttctgcatccagcttataagcagaaatgctctgaatacttgtctccactttta
tcaccattcagacctgctattgttcgaaggcaagtatattttcctgacaggcgacttata
caatttgactgtggtaaattgcaagaacttgcagttttacttagaaaactaaagtcagaa
ggtcacagagcactaatattcactcagatgaccaagatgcttgataccttggaggctttc
atcaatctgtatggttacacatatatgcgtttagatggatccactccgcccgaggagagg
cagactttaatgcagcggtttaacacgaatccaaaaatttttcttttcatattgtcaacc
cgtagtgggggtgtgggtattaaccttgttggggcagacactgtaatcttttatgatagt
gactggaatcctgctatggaccaacaagctcaagatcgatgccaccgtattggacagaca
cgtgaagtaaatatttatcggttgatcagtcagagtaccattgaagaaaatatcctgaag
aaggcaaatcagaagcgtgcacttgatgatctagttatacagagtgggggctacaacact
gaattcttcaaaaagcttgaccctatggagcttttctctggtcttagggcacttcccgtg
aagaatatgcaaaaggagaaaaaccacaacacaactgaggtttctctgtctaatgctgat
cttgaagctgctctaaagcatgcagaagatgaagccgattacatggcattaaagaaagtt
gagcaggaagaagctgtggacaaccaagaatttacagaagaagccattgtgagattggaa
gatgatgaattagtaaatgaggacgatgtgaagattgatgaacctgcagatcggggtgga
gtcgtggcgtcttcaagcaaagaaaatggggttgatcctaatgaaggaagagctcatact
gttgcttgtagagaagatgatgtggacatgatggctgatgtcaaacagatggctgcggct
gctgcagctgcaggacaagaaatctcatcatttggcgatcaattacgtccgatagatagg
tatgcaattcgttttctagaattgtgggacccaattatagacaagaaagcagtggaatct
caggctaggtttgaggagacagaatgggaactggaccgcattgaaaaatacaaggaagaa
atggaagctgagattgatgaagatgaggaacctcttgtatatgaaacatgggatgctgat
tttgcaactgaggcatatcggcagcaggttgaggctttagctcaaattcagttggaggaa
ctggaatacgaagctaaactgaaggaagatgaagcagaggaaaattgtgattctatgaag
aatgagatgccaattgatcctaaaccaaagactaagaagaaatcgaagaaagccaaattt
aaatctctgaagaagcagtctctagcttctgaactgaaacctttgaaaggagagctacaa
gctgaacctatgtccatagatgaagactctctctctcatgagatggttacgtattccgat
acggaatcaccacgttcaagtgtgcagagaaaacgtaagaaggctgaagtcataccagtt
ggcgaagagaagagttcaaagaagtctaagaagctcaagaagtctactcttgaaatatgt
cctacggagtttgatactaacctctctactatggatcatgatgaagttacagagtcaaaa
ccatgtgagagtatggttgagtttgatcataagccagctagcagaagcaaaatgggaggg
aaaatttctatcacttccatgcctgtaaagcgaattctactgattaaaccagagaagcta
aagaaggggaatatttggtctagagactgtattccatcaccagatttttggttgtcacag
gaggatgctatgttatgtgctgttgtacatgagtatggtcctcattggagcttggttagt
gacgtgctttatggaatgaccgctggtgggttttataggggaagatatcgccatcccatc
cattgctgtgagagatttagggaactcatccaaagatatgttttgtctacaccggacaat
cctaactatgaaaaagttaacaatataggatctggaaaggctcttctaaaagtgacagag
gataatattcgaatgttactaaacgttgccgccgaccagcccaatacagagttcctcatt
cagaaacacttcactgccttgctttcagctgtctggaaggtgacatcccacaaagaccgc
cgaaaaaatctcccatcttcccagaatggtttatattttgggggaagcattttcagccct
tccaaccaaaagtctcagactcccatgatggaacgtacagaaagaatgaaattgaccaat
ttcggacatggtaccaagttggtagcggctgcactgaatgatgccagcaacagacagggt
accaagttggtaccagctgcacttaatgatgccagcagcaggtgtgacaatgacacagtg
tttcgtccaaacctggggaaagattcttcaattgaatcagaacggttggatataactctg
gaatttcagggagcaaaagatgacacaatagatgaattgccatctgttttaaatttatca
atatctgcttctgaccgttttccatcgctaaataaagctactgaagatcatcatctaagg
aaatcaagcaatgtaaatttggctgagaaccgtttcaggaccgcaacaagaacttgcaat
gaagatgccatgggatgggcttcatcggtattcccaacaaatgatctcaggtctcggtca
atgtcaaagttaacgaccacgggaaagcacaaacttgtcttctctgattccgttagacct
tccaaatcgaagatcagaaaaagttcagtggagcatggtgagatgcgtaactttgtttct
gagcaggtactcccacctttcccaatggctgcacccctgaatccaaatccgaggtttgac
ctgaacacccccatcgatgaggatgctggaatttatgaattggaaagcgattccttttct
tgccttgacgagtctttgctggaaatggaaacctttggagttctcccacatgaatacgtt
cctggcttgattggaggcctcgatgatgaacaattgccagaatatacagacattgggtaa
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