Malus sylvestris (European crab apple): 126585394
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Entry
126585394 CDS
T09027
Name
(RefSeq) serine/threonine protein phosphatase 2A regulatory subunit B''alpha-like
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03015
mRNA surveillance pathway
msyl04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126585394
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
126585394
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
msyl01009
]
126585394
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126585394
03036 Chromosome and associated proteins [BR:
msyl03036
]
126585394
Protein phosphatases and associated proteins [BR:
msyl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
126585394
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
126585394
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
126585394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_5
Phage_Inh_C
DUF4187
Motif
Other DBs
NCBI-GeneID:
126585394
NCBI-ProteinID:
XP_050105771
LinkDB
All DBs
Position
10:29841662..29847559
Genome browser
AA seq
540 aa
AA seq
DB search
MDIDTVAGDVGSLDPELLQLPELSPFALKTSPQIAEDLFAQWLSLPQTRRLVKSLVDDAI
AGIPITAPGSTSSANTAGSNVLPSMFPAGSTPPLSPRSSPGSPRFSKPKTSPSSLRSPLK
LASEPVREAIPQFYFHNGPPPPKELKEQCLSRIDDLFSGQMDGLQLHEFKLVTKELCKLP
TFVSSAIFRKIDASCSGIVTRDAFIKYWVDGNMLTMDTATQIFKILKQSDRNYLTQVDFK
PILLELVATHPGLEFLHGTPEFQERYAETVIYRIFYYINRSGNGRLTLRELKRGNLIAAM
QHADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRI
FSQIPRKFTSKVEGKMGYEDFAYFMLSEEDKSCEPSLEYWFRCIDLDGNGVLTPNELQFF
YEEQLHRMECMAQEPVLFEDILCQIVDMIAPEREDYITLADLKGCKLSGNVFNILFNLNK
FIAFESRDPFLIRQEREDPTLTEWDRFAHREYIRLSMEEDGENASNGSVEVWDESLEAPF
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atggatatagacacagtagcaggggatgttggttctttggatcctgagcttttacagctg
ccggaattgtcaccgtttgcacttaaaaccagtcctcaaattgctgaggatttgtttgct
cagtggctttcgctcccgcagacccgtcgtttggtgaagtctctagtagatgatgcaata
gccggaattcctatcactgcacctgggagcacgtcaagtgcaaatactgctgggagcaat
gtgttaccttccatgtttccggctggaagtacacctccactttcaccaagaagttcccct
ggttctccgcgtttttcaaagccgaagactagtccttcttctcttcgctctccactaaaa
ttggctagcgaaccagtgcgagaagccattcctcagttctattttcataatggtccacca
ccaccaaaggaacttaaggagcaatgtctttctagaattgatgaccttttcagtggtcag
atggatggattgcaactgcacgagtttaagttggttacaaaggagttatgcaagctgcca
acatttgtctcttctgccatctttagaaagattgatgctagctgcagcgggatagtgacc
agggatgcattcatcaaatattgggttgatggaaacatgctcacaatggatacagcaact
caaatatttaaaattttaaagcagtctgatcgtaattaccttactcaggtagacttcaaa
cccattcttctagagcttgtggcaactcatccagggttggaatttttacatggaactcct
gaatttcaagaaagatatgctgaaactgtaatatacagaatattttactacataaacaga
tcaggaaatggtcgccttacccttagggagctaaaacgaggaaatctaattgctgccatg
caacatgcagatgaggaagaggacattaacaaagttctaaggtacttctcatatgaacat
ttttatgtcatatactgcaaattttgggagctggacacagaccacgatttcttgatcgac
aaagagaatcttattagatatggtaatcatgcccttacctacaggatcgttgatagaata
ttttcacagattccgaggaaatttactagcaaggttgaagggaagatgggttatgaagat
tttgcttacttcatgttgtcagaggaggataagtcgtgtgagcctagccttgagtattgg
ttcagatgtatagatctagatggaaatggagttcttacacccaatgagttgcagtttttt
tatgaggagcagctgcatcgtatggaatgcatggcccaagagcctgttctatttgaggat
attttgtgccaaatagttgacatgattgcaccagagagggaagattatatcactctagct
gacttgaaaggttgcaaactttcaggaaatgtcttcaatatccttttcaaccttaataaa
ttcatagcttttgaaagtcgcgatccatttcttattcgtcaggaacgtgaggatccaact
ttgactgagtgggaccgctttgcacacagagaatatatacggctgtcaatggaagaagat
ggtgagaatgcctctaatggaagtgtagaagtttgggacgaatcactcgaggctcctttt
taa
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