Malus sylvestris (European crab apple): 126585475
Help
Entry
126585475 CDS
T09027
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3-like
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
126585475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126585475
Enzymes [BR:
msyl01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
126585475
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
HECT type E3
126585475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
Motif
Other DBs
NCBI-GeneID:
126585475
NCBI-ProteinID:
XP_050105878
LinkDB
All DBs
Position
10:22426334..22436240
Genome browser
AA seq
1887 aa
AA seq
DB search
METRSRKRAEATSAAPSSSSSGRTTRSSKRARLSASSLSSVSPTPITTRSRASRTQNEPA
PAAPMDPTNESSGSRGRRNKSSDKDGSDKGKEKEHEVRVRDREREREREREREAERNLGL
NMDAGGTGDDDDNDSEGGVGILHQNLTSASSALQGLLRKIGAGLDDLLPSSAMGSASSSH
QSGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHES
NPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQ
EHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPLDAADFVMEAVPLLTNLL
QYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISTSNSGGGQSTLSTP
TYTGLIRLLSTCASGSPLGSKTLLLLGISGILKDVLSGSGISSSTSVSPALSKPPEQIFE
IVNLANELLPPLPQGTISIPSSFNVFMKGPVVKKSSASGSGKQEDTNGTGSEVSAREKLL
NEQPGLLQQFGMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSNAEMIQSLLSSTNIS
SFLAGVLAWKDPHVLVPALQIAEILMEKLPNTFSKVFVREGVVHAVDQLILPGTPNSVPV
PVSSAEKDSDPVPGTSSRSRRYRRRNSNSNPDGNSLEETKIPPSANIGSPPSSVEIPTVN
SSLRMAVSACAKAFKDKYFPSDPGAVEVGVTDDLLHLKNLCMKLNAGVDDQKTKAKGKSK
AFGSRLVDSSASKEEYMIGVVSEMLAELSKGDGVSTFEFIGSGVVAALLNYFSYGYFSKE
RISEANLPKLHEQALRRFKSFVAVALPFSINEGSVAPMTVLVQKLQNALSSLERFPVVLS
HSSRSSTGSARLSSGLSALSQPFKLRLCRAQGEKTIRDYSSNVVLIDPLASLAAVEEFLW
PRVQRGESGQKPAASAGNSESGTTPTGAGASSLSTSNPASTTRRHSTRSRTSVNIGDTAR
REPSQEKSTSSSKGKGKAVLKPSQEEARGPQTRNAARRRAALDKDVQMKATNGDTTSEDE
ELDISPVEMDELVIEDDDISDDEDDDHDVLRDDSLPVCMPDKVHDVKLGDSTEDATVASA
TSDNHTNPASGSSSRAATGRGSDSAEHRSSNSAYGSKGAMSFAAAAMAGLGSASRGIRGG
RDRQGRPIFGSSSDPPKLIFTSGGKQLNRHLTIYQAIQRQLVQDEDDDERYAGSDFVSSE
GSRLWSDIYTITYQRPDNQTDRASVGGASPTTATKSGKSASASNFNSESQLHRMSLLDSI
LQGELPCDLEKSNPTYNILALLRVLEGLNQLAPRLRAQIVSDSFAEGKVLNLDDLSTTGA
RVFPEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAF
GLSRALYRLQQQQGADGHANEREVRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKSVLE
VEYFGEVGTGLGPTLEFYTLLSHDLQRVRLGMWRSNSSMEKTSMDIDGDEPKDGKSNGDI
VQAPLGLFPRPWPPNAVASDGSQFSKVIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLL
LGQELDLHDILSFDAELGKTLQELHNLVWRKLYLESNGDNRDAIVELHLRGVSIDDLCLD
FTLPGYPDYVLKPGDENVDINNLEEYISLVVDATVKTGIMRQIEAFRAGFNQVFDISSLQ
IFTPHELDYLLCGRRELWEAETLADHIKFDHGYNAKSPAILNLLEIMGEFTPEQQRAFCQ
FVTGAPRLPPGGLAVLNPKLTIVRKHSSTANNAATNGTGVSELADDDLPSVMTCANYLKL
PPYSTKEIMFKKLLYAISEGQGSFDLS
NT seq
5664 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcggagccggaagcgggcggaggccacctcagcagccccttcttcttcttcg
tctggtcgcaccactcgttcttccaagcgcgctcgtctctctgcttcttcattgtcttct
gttagccccactccgattacgacccggtcccgcgcctctcgcacccaaaacgaacctgca
cccgccgcacccatggaccccacgaacgaatcgtccggctcgcgcggccgccgcaacaag
agttccgataaggatggctcggataaagggaaggagaaggagcatgaggttagggttagg
gatagggagagagagagggagagggaaagagagagggaagctgagaggaacctagggttg
aatatggatgcaggtggaactggcgacgacgatgacaatgatagcgaaggcggtgttgga
attttgcaccagaacttgacttcagcgagtagtgcccttcaggggcttcttaggaagatc
ggtgccggactggatgacctgcttccttcttcggctatgggttcggcttcgtcctcgcac
cagagcgggaggctgaagaagattttatctgggttaagagctgatggggaagaagggaaa
caggtggaagctttgactcagctgtgtgaaatgctttcaattggaactgaggagtcgttg
agcacattttcggttgattcatttgtgcctgtacttgtgggattgctaaatcatgagagc
aatcctgatattatgcttcttgcagctagagcactcactcatctttgcgatgtgcttcca
tcgtcttgtgccgccgtggtacattatggtgctgtttcttgcttttgtgcaaggttgttg
acgattgagtacatggacttggcagagcagtcactgcaagctctcaagaaaatatcacaa
gaacacccaactgcctgtcttcgagctggtgctcttatggcagtgctttcttatctggat
tttttctccacaggagtccagcgtgtggcattatcaactgctgcgaatatgtgcaagaaa
cttcctttagatgcagctgactttgtgatggaagctgtcccattgttgacaaaccttctg
cagtatcatgatgcaaaggttttggaacatgcttctgtatgtctgacacgaattgctgaa
gcatttgcatcatctcctgacaaacttgacgaattatgcaaccatgggctagttactcaa
gctgcgtcccttatttccaccagcaattctggaggtggtcagtcaactctaagtacacct
acttatactggtttaatccgactactatcaacctgtgcaagtggttccccattagggtct
aaaactttgcttcttcttgggatcagtggaattcttaaagatgtactttcaggttctgga
atttcttctagcacatcagtttctcctgctttaagtaagccaccagagcagatctttgag
attgtcaatctggcaaatgagctacttcctccattgccacaaggaaccatttccattcca
tccagcttcaatgtatttatgaaaggtcctgttgtgaaaaagtcgtctgctagcggctct
gggaaacaagaagacaccaatggaactggttctgaggtttcagctcgtgagaaattattg
aatgaacagcctgggcttctccagcaatttggaatggatctccttcctgttttaatacag
atttatggttctagcgttaatggccctgttcgccacaaatgtctttcagtaattgggaaa
ttaatgtacttcagcaatgcagagatgatacagtctttattaagttcaacaaatatttca
agtttcttagccggtgtcttagcatggaaagatccgcatgtcttggttcctgctctccaa
attgctgagatactcatggagaagcttcccaatactttctccaaggtgtttgtgagagaa
ggtgttgttcatgccgtggaccaacttatcttacctggtactccaaattcagttcctgtc
ccagtatcttctgctgaaaaggatagtgatcctgttcctggaacatcatcacgttctagg
cgttatagacgacgcaacagtaactcaaatccagatggaaattcattggaagaaactaag
attcccccttcagcaaatattggttcacctccaagttcagtggagattcctactgttaac
tccagccttcgaatggctgtcagtgcatgtgctaaagcttttaaagacaagtacttccct
tcagatcctggggctgttgaagttggagttacagatgatctattacatttaaagaatcta
tgcatgaagttgaatgcaggtgttgatgaccaaaaaacgaaagcaaagggaaagtcgaaa
gcttttgggtctcgcttggttgatagttctgcaagtaaggaggagtacatgattggtgtg
gtatctgagatgctagccgaactaagcaagggggatggtgtatccacttttgagttcatt
ggtagtggtgttgttgcagcattgctcaactatttttcttatgggtacttctccaaggag
aggatttcggaagctaatttgcccaagcttcatgagcaagcactgagaagatttaagtca
tttgttgctgttgctcttcctttcagtattaatgaaggaagtgtagcaccaatgactgtc
ctcgttcagaagctccaaaatgctttgtcctccttagagcgttttccggttgtgctgagt
cattcatctaggtcatccactgggagcgcacgcctctcctctggacttagtgcattatct
cagccctttaagttgcgtctttgtcgagcacaaggagaaaagaccatccgagactattca
tcgaacgttgttctgattgatccattagcaagtttagctgctgtagaagagtttctttgg
cctcgagtacagcgaggggaatctggtcagaagcctgctgcctctgctggaaactcggaa
tctggaactacacctacaggtgctggtgcttcatctctgtctacttcaaatcctgcttcc
accactcgtcgccattcaacgcgatccagaacatctgtgaatataggagatacagctagg
agggaaccatcacaagagaagagcacaagctcatcaaaagggaagggtaaagctgttttg
aagccttctcaggaggaagcaagaggacctcaaacgagaaatgcagctcgtagacgagca
gctcttgataaagatgttcaaatgaaggccacaaatggggacactacttctgaggatgag
gaattggatatatcgcctgttgagatggatgaattggttattgaagatgatgatatctca
gatgacgaagatgatgaccatgatgtcctaagagatgactctcttcctgtttgcatgccg
gataaagtacacgatgtcaaattgggagactcaactgaggatgctactgtagcttcagcc
acaagtgacaatcatactaacccagcttctggctctagtagcagagctgctacaggtaga
ggctcagattctgctgagcataggagtagtaattctgcttatggttcaaaaggtgcaatg
tcatttgctgctgccgccatggctgggcttggatctgccagcaggggcattaggggaggc
agagatagacaaggacgtcctatttttggcagttctagtgatcctcctaagttgattttt
acttctggagggaagcagcttaataggcatctgactatctatcaggctattcagagacag
cttgtgcaggatgaggatgatgatgaaaggtatgctgggagtgattttgtgtccagtgaa
ggtagcaggctatggagtgatatttacactatcacataccagaggccagacaatcaaact
gacagggcctctgttggaggtgcaagtcctacaactgcaacaaaatctgggaaatctgcc
tctgcttccaatttcaactctgaatctcaattgcatcgaatgtcacttttggatagtatt
ttgcagggagagcttccttgtgatttagaaaaatctaatcctacttataatatactggca
ctactgcgtgtactagagggcttgaatcagcttgctcctcgcctgagagctcagatagtt
tccgacagttttgcggagggtaaagttttgaatttggatgacttgagtacaactggtgct
agagtttttcctgaggaatttattaacagcaaactcactcccaaattagcccggcaaatt
caagatgcccttgcattgtgcagtgggagtcttccttcttggtgttaccagttgacaaaa
gcatgtccatttttgtttccttttgagactcggagacagtatttctattcaacagctttt
ggattgtctcgcgctctgtaccgtcttcagcagcagcagggtgctgatggtcatgcaaat
gaacgagaggtgagagttgggagattgcaacggcagaaagtccgcgtttcccgaaaccgg
attttggattctgctgcaaaagtaatggagatgtattccagccaaaaatctgtgcttgaa
gtagaatattttggtgaagtgggcactggcttgggtcctacgcttgagttctacacactt
ttaagtcatgacctacaaagagttagacttggcatgtggaggtcaaattcttcaatggag
aaaacatcaatggatattgatggagatgaacctaaagatggcaaaagcaatggtgacatt
gtccaagctccgcttgggttgttccctcgtccctggcctccaaacgctgttgcttctgat
ggtagccagttttcaaaagtgatagaatactttaggttggttgggcgtgtgatggcaaag
gctcttcaagatgggcggctattggatttgccactatcaacagcattttataagcttttg
cttggtcaagagcttgatttacatgatatcctttcctttgatgctgagcttggaaagact
ctgcaagaattacataatcttgtctggcggaaactatatttagaatcaaatggtgataat
cgtgatgccattgttgaattgcatttacgtggagtgtcaattgatgacctgtgtttagat
tttacactccctggctatccagattatgtgttgaaacctggagatgaaaatgttgacatc
aataacttggaggagtacatatctttagttgttgacgcgacagtgaagactgggataatg
aggcaaattgaagcatttagagcagggtttaatcaggtctttgacatatcgtctttacaa
atatttactccacatgagttggactatctgctttgtggtcgtcgagagttgtgggaggcg
gagacccttgctgatcatataaagtttgatcatggatacaatgccaagagccctgcaata
cttaatttgctcgagattatgggtgagttcacgccagagcagcagcgtgccttctgccag
tttgttactggtgcacctcggcttccacctggtggtttggcggtgctgaatccaaaactg
acgattgtgagaaagcattcttcaaccgcaaataatgctgcaaccaacgggaccggggtt
tcagagttggcagatgatgacctgcccagtgtcatgacatgcgctaattacctgaagctt
cctccttattcaaccaaggaaattatgttcaagaaattattgtatgcaatcagtgaaggg
caaggatcctttgatttgtcatga
DBGET
integrated database retrieval system
