Malus sylvestris (European crab apple): 126585864
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Entry
126585864 CDS
T09027
Name
(RefSeq) DNA damage-binding protein 1-like
KO
K10610
DNA damage-binding protein 1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03420
Nucleotide excision repair
msyl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
126585864
09124 Replication and repair
03420 Nucleotide excision repair
126585864
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126585864
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126585864
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
126585864
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
126585864
TCR (transcription coupled repair) factors
Cul4-CSA complex
126585864
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
DUF6213
Motif
Other DBs
NCBI-GeneID:
126585864
NCBI-ProteinID:
XP_050106383
LinkDB
All DBs
Position
10:complement(36383916..36392838)
Genome browser
AA seq
1089 aa
AA seq
DB search
MSVWNYVVTAHKPTNVTHSCVGNFTAPQELNLITAKCTRIEIQLLTPLGLQPILDVPIYG
RIATLELFRPHGETQDFLFIATERYKFCVLQWDAEASELITRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCSKPTIVVL
YQDNKDVRHVKTYEVSLKDKDFVEGPWAQNNVENGADLLIPVPPPLCGVLIIGEDNIVYR
SPNTFKAIPIRHSITRAYGRVDADGSRYLLGDHAGQLHLLVITHEKEKVSGLKIELLGET
SIASTISYLDNAFVYIGSSYGDSQLVKLNLQPDAKGSYVEVLERYVNLGPIVDFCVVDLE
RQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVS
FISETRILAMNLEDELEETEIEGFCSQVQTLFCHDAVCNQLVQVTSSSVRLVSSTTRELK
HEWNAPAGNSINVATANATQVLLATGGKHLVYLEIGDGVLTEKNHAQLDFEISCLDINPI
GDNPNYSQLAAVGMWTDISVQIYSLPALSRITKEHLGGEIIPRSVLLCAFEGISYLLCAL
GDGHLLNFILNTSTGELTDRKKVSLGTQPITLRTFSSKSTTHVFAASDRPTVIYSSNKKL
LYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICH
QEQSRTFAILSVKYNQSSAEDSETHFIRLLDDQSFDLITYYQLDAFEYACSILSCSFSDD
SNLYYCVGTAYVLPEENEPTKGRILVFIVEDGKLQLVAEKETKGSVYSLNAFNGKLLAAI
NQKIQLYKWTLRDDGTRELQSECGHHGHILALYVQTRGDFIIVGDLMKSISLLMYKHEEG
AIEERARDYNANWMSAVEILDDDVYIGAENFVNLFTVRKNSEGATDEERGRLEVVGEYHL
GEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPQEHYAFLEKLQSNLRKV
IKGVGGLNHEQWRSFSNEKKTVDAKNFLDGDLIESFLDLNRSKMDEISKQMRVSVEELCK
RVEELTRLH
NT seq
3270 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtatggaactacgtcgtaacggctcacaagcccaccaacgtcacccactcctgc
gtcggcaacttcaccgcccctcaggagctcaatctaatcactgcgaaatgtacgcgaatt
gaaattcagctacttactcctctgggactgcagcctatcttggatgtcccgatatatgga
agaatagcgacgcttgaacttttccggcctcatggtgaaacacaggattttctatttatt
gcaacagaaaggtacaaattttgtgttcttcagtgggatgccgaagcatctgagctcatc
acaagggcaatgggggatgtctcagatcgcataggtcgtccgacagacaatggtcaaatt
ggtattattgatccagattgcagattaattggactccatttgtatgatggattgtttaag
gttattccttttgataataaagggcagctcaaggaagcatttaatatacggcttgaagaa
cttcaagttttggatatcaagtttctatatggttgttcaaaaccaacaattgtagttcta
tatcaggataacaaagatgttcgccatgtcaaaacatatgaggtttctctgaaggataag
gatttcgttgaaggcccttgggcacaaaacaacgttgaaaatggggctgatttgttaata
ccagttcctccgccactctgcggtgttcttattattggagaagataatattgtttaccgc
agcccgaacacatttaaagcaatcccaataagacattccatcacaagagcctatgggaga
gtagatgcagatggttccaggtatttacttggtgatcatgccgggcaacttcacctactt
gttataacgcatgagaaagaaaaggtgtctggactgaaaattgagctcttgggggagaca
tcaattgcatctactatctcataccttgataatgcatttgtctatatcggatcaagttat
ggggattcacagcttgtgaagctaaatctacagcctgatgcaaagggttcatatgtggaa
gtcttagaaaggtatgtcaatttggggccgatcgttgacttttgtgtggttgatcttgag
aggcaaggccaaggtcaggttgtaacttgttctggagctttcaaggatggttctcttcgt
gtagttcggaacggaattggaatcaatgaacaggcatcagttgagcttcaaggtatcaag
ggaatgtggtcgttaagatcctccactgatgatccttttgacaccttcctggttgtaagc
tttatcagtgagacaaggattttggcaatgaatcttgaggatgagctggaagaaactgag
atagaaggcttctgttctcaagtacagactttattttgccacgatgctgtctgtaatcaa
ctggtacaggtcacttcaagctctgtacgactagtcagttctacaactagggagctcaag
catgagtggaatgctccagcaggcaattcgattaatgttgccactgctaatgccacccag
gtcttattggcgactggtggaaagcatttagtttatttggaaataggtgatggggtattg
acagagaaaaaccacgcacagttagattttgagatatcatgccttgacataaaccccata
ggtgacaatcccaactatagccagctggcagctgttggaatgtggacagatattagtgtc
cagatatattcacttcctgccctgagccgcatcacaaaggaacatttgggaggggagatc
atacctcgttctgttcttctttgtgcctttgaagggatatcctacctattgtgtgccctt
ggagatgggcacctcttaaactttatattgaacacaagcactggtgagttgacggacagg
aaaaaagtctcacttgggacgcagcccattacactccgtaccttctcatccaagagtact
acgcatgtatttgctgcatcggataggccaactgtcatctatagtagcaacaaaaaattg
ctttacagcaatgtaaatctgaaagaagtcagccatatgtgcccattcaactctgctgct
tttccagacagccttgcaattgctaaggaaggtgaacttactatcggcactattgatgac
atccagaagcttcatattcgctctattcccctaggtgagcatgcgcgtcgtatctgtcat
caggagcagtccaggactttcgccattttgagtgtgaaatataaccagtctagtgcagaa
gactcagaaacacacttcatccggttgttagatgaccagagttttgacctcataacatat
tatcaactggacgcttttgagtatgcctgctctatactaagctgttctttctcagatgac
agtaatttatattactgtgtcgggactgcatatgttctcccggaagaaaatgagccaacc
aagggccgcattctggttttcattgttgaagatgggaagctgcagctcgttgctgagaag
gaaaccaaggggtctgtttactcgttgaatgcgttcaatggcaagctacttgctgctatt
aatcaaaagatacagttatacaagtggactctgcgggatgatggtactcgtgaattgcaa
tcggaatgtgggcatcatggccacatacttgccctttatgtccagactcgtggagacttc
attattgttggggatttaatgaagtcaatctctctgttaatgtacaagcatgaggaaggt
gccattgaggagcgagcccgtgattataatgcaaattggatgtctgctgtagagatcctc
gacgatgatgtttacattggagctgaaaatttcgtcaacctgttcactgttcgtaaaaat
agtgagggtgcaactgatgaggaacggggccgccttgaggttgtaggtgagtatcaccta
ggcgagtttgtcaataggttccggcacggctctcttgtcatgcggttgccagactctgac
gtgggccagattccaactgtcatctttggcaccgtcaatggtgtaattggagtaattgcc
tcacttcctcaagaacattatgcatttttggagaagctccagtcaaacttgaggaaggtg
ataaagggtgttggagggttgaaccatgagcagtggagatcattcagcaacgagaagaaa
actgtagacgccaaaaatttcttggatggcgatctgatagaatcgttccttgatctcaac
cgtagcaagatggacgagatctcaaaacaaatgcgcgtttcagtggaggagctctgcaag
agagtagaagaattgacaaggctgcattga
DBGET
integrated database retrieval system
