Malus sylvestris (European crab apple): 126586200
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Entry
126586200 CDS
T09027
Name
(RefSeq) transcription initiation factor IIF subunit alpha-like
KO
K03138
transcription initiation factor TFIIF subunit alpha
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
126586200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126586200
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
126586200
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIF_alpha
zf-C3HC4_3
DZR_2
DUF1258
Zn_Ribbon_1
C1_1
ZnF_RZ-type
Motif
Other DBs
NCBI-GeneID:
126586200
NCBI-ProteinID:
XP_050106878
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All DBs
Position
10:complement(42448707..42453029)
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AA seq
546 aa
AA seq
DB search
MSTTDLILRPECGGCKTTKDLYGSNCKHLTLCDDCGKKMALNRAKCNECGTVVTRLIREY
NVRASTATDKNYFIGRFVTGLPSFSKNKNSENKWSLHKDGLQGRQLSDAMREKYKNKPWV
LEDESGRSQYQGHLEGAQTATYYLLIKHPSGKEFSAIPAGSWFNFNKVAQYKQLTLEEAE
EKISNRKKTADGYERWMMKAANNGAALFGEVERLDKDNGGAGGKGRKKTAGGDDDEEGNG
SDRGDEDDDEELERKKRLNKRGGDGGDGDDDNEGVGGGDVDMDDDDIEKGDDWEHEEIFT
DDDEAVGNNPEEREDLEPEIPAPPEIKQDDEDEDEDDKEGGLSKSGKELKKLLGRSGGLN
DSDVEDDDDDDDDLDDDIGFPPALAPKQKDAPKEEPSDNSPSKPTPSASSRGTTPTSKSS
KGKRKSSGDDSKATNSAPPKKVKTENEQKSIKEEPVSVSASKSSAPPKGTPPVKTEPSSS
GGRVTEEEIRAVLMQRTPLTTNDLVSKFKGRLKSSEEKTAFSNILRRISKIKKGNGTSSY
IVLKER
NT seq
1641 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgaccgatttgatactgagacctgagtgtggcggatgtaaaacgaccaaggat
ttatacggaagcaattgcaagcacttgactctgtgcgacgactgtggcaaaaaaatggct
ctcaaccgcgccaagtgcaacgagtgcggcaccgtcgtcactcgcttaattcgagagtat
aatgttcgagcgagtactgccaccgataagaactacttcattgggagatttgtgacgggg
ttgccgagtttttcgaagaacaagaattctgaaaataaatggtctctccacaaggatgga
ctacaaggacgccaacttagtgatgccatgcgggagaagtacaagaacaaaccatgggtt
ttggaggacgaaagtggccggtctcagtaccagggtcatcttgaaggtgcacagactgca
acttactacttactaataaaacatccctctggaaaggagttttctgctattcctgctggt
tcttggttcaatttcaacaaggttgcgcaatacaagcaacttacattggaagaagctgaa
gagaagattagtaataggaaaaagactgcagatgggtatgaaagatggatgatgaaagct
gcaaataatggagctgctttatttggtgaagtggagaggcttgacaaggataatggtggg
gctggtgggaagggacgaaaaaagacggctggtggtgatgatgatgaagaaggaaatggc
tcagatagaggggatgaggatgatgatgaagagttggaaaggaaaaaaagattgaataaa
agaggtggtgatggtggtgatggtgatgatgataacgaaggtgtagggggaggtgatgtg
gacatggatgatgatgatatcgagaagggtgatgactgggagcacgaagaaattttcact
gatgatgatgaagcagttggaaacaatcctgaggaaagggaagatttggaaccagagatt
ccagctcctccagaaattaagcaggatgatgaggacgaggatgaagatgacaaagagggt
ggactgagcaaatcaggaaaagagttgaagaagctacttgggcgaagtggtggactgaat
gattcagatgtagaggatgacgacgatgacgatgatgacctggatgatgatattggcttt
cctccagcgctggctccaaagcagaaggatgcacccaaagaggaaccatctgacaacagt
ccctcaaaaccaacaccttctgcgtccagtcgaggaactacaccaacctccaaatcctca
aagggaaagagaaaatcaagtggcgatgattctaaggcaacgaacagtgcacctcccaag
aaggtcaagactgaaaatgaacaaaaatccatcaaagaggagcctgtgtctgtgtctgct
tctaaaagtagcgcgcctccaaaaggtactccaccggtgaaaacggagccatcgtcatct
ggtggacgcgtcaccgaggaagaaatcagggctgtgttgatgcagagaacaccactcacc
acaaatgatcttgtttctaaatttaagggaagactcaaatcttctgaggaaaagaccgct
ttttcgaatattctaaggagaatttcaaagataaagaaggggaacggaaccagcagctat
atagtactgaaagagcgatga
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