Malus sylvestris (European crab apple): 126586242
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Entry
126586242 CDS
T09027
Name
(RefSeq) pre-mRNA-processing factor 39-1-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126586242
Spliceosome [BR:
msyl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
126586242
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
NRDE-2
UTP6_C
TPR_12
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
126586242
NCBI-ProteinID:
XP_050106980
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All DBs
Position
10:complement(29354411..29363301)
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AA seq
826 aa
AA seq
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MADSETVVAQTSAVMGYTSAGYTSTGYADASSNIATDTGALHSEATPEFSNTPGGSNIGD
GNAYSADPNSLMLETQSYTAYETKPAVGVTDASGNVVSNENDALESSQVASYDSSMNGVI
ASGVGTVSSVDNGNAEPLDPQQFGDASAMSVEEDRLWNIVRANSLDFNAWTALIEETEKI
AQDNILKIRKVYDAFLAEFPLCYGYWKKYADHEARLGSIDKVVEVYERAVQGVTYSVDIW
LHYCIFAISTYGDPDTVRRLFERGLAYVGTDYLSFTLWDKYIEYEYMQQEWGRLAMIYSR
ILENPNQQLDRYWNSFKELAGSRPLSELRTAEEAAAAGGAHSEGIDKVNGEDVQFDGAEQ
SPKPVSADLTEAEELENFITIREEVYKKAKEFDSKIISFETAIRRPYFHVRPLNSVELEN
WTSYLDFIEREGDLSKVVKLYERCLIACANYPEYWIGYVLCMEASGSMDIANNALARATQ
VFVKRQPEMHLFAARFKEQSGDIPGAQAAYQLVHSELSPGLLEAIVKHANMEHRLGNVEA
AYSLYEQAIAIEKVKEHSQTLPMLYAQYSRFTYLVSLNAEKAREILDGALEHIQLSRAFL
ESMMVFETIQPLPKRIDHIDSLVVKFIEPSSENPNFASVADREELSGIYLEFVNLFGDAQ
SIKKAEDRHAKLFIPLRSSTSELKKRQAEDFLSSDKVKLAKAYSGVPSPAQSIMGAYPNA
QSQWPAGYGAQPQAWPPATQATQGQQWPAGYTQQPYNAYGGYGTAGYANPQAPVVAPQTA
AYGAYPSTYPAQQAVPPQSYAHPTVAAVAPAPQPASVPQAYYGSYY
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atggcagacagtgagacagttgttgctcaaacatctgcagtgatggggtatacatcagca
ggatatacttcaacgggatatgctgatgccagctcaaatattgctactgatacgggtgca
ttgcattctgaggctaccccagagttttctaatacacctggcggttctaacataggtgat
ggaaatgcatattctgcggatcccaattctctcatgctagaaacacaaagttacacagca
tatgagaccaaaccagctgttggagtgacagatgctagtgggaatgttgttagtaatgaa
aatgacgccttggagtcatctcaagttgctagttatgattcttctatgaatggtgttatt
gcttctggagtgggaactgtttcatcagttgataatggaaatgccgaacctcttgatcca
caacaatttggggatgcttctgccatgtctgtcgaagaagatagactgtggaacattgtg
agggctaattccttggatttcaatgcctggactgctttaattgaagagacagagaagatt
gcacaggataacatattgaaaattcggaaagtttatgatgcttttttagcagagtttccg
ttatgttatggttattggaaaaagtatgcggatcatgaggcacgtctaggttctatcgat
aaagttgtggaggtttatgaacgtgcagttcaaggtgttacctattcagttgatatctgg
ttgcattactgcatttttgctataagcacatatggagatccagacactgttagaaggctt
tttgagcgaggacttgcttatgttggaacagattacctgtcctttactctgtgggataag
tatatagaatatgagtacatgcagcaggagtggggccgccttgccatgatctattcacga
atattagagaacccaaatcagcaactggatcggtattggaacagctttaaggagttagct
ggaagtcggccactctcagaattgaggactgctgaagaagctgcagcagcaggaggtgca
cattcagagggtattgacaaagtaaatggggaagatgttcaatttgatggtgcagaacaa
tctcctaaacctgtaagtgctgacttaacagaagccgaggagttggagaattttatcacc
attagagaagaggtgtataagaaagctaaagagttcgattctaagatcattagttttgaa
acagctattaggaggccctactttcacgtgcggcctctcaattctgtagagcttgaaaat
tggaccagctacctagactttatagaaagggagggcgacttgagcaaggttgtcaagcta
tatgaaaggtgcctaattgcttgtgctaattatcctgaatactggattggatatgttcta
tgcatggaggccagtggaagtatggatattgccaataatgctcttgcacgtgcaacccag
gtttttgtgaagagacaaccggagatgcacctttttgctgctcgattcaaagagcagagt
ggggatatacctggtgctcaagctgcctatcaacttgtacattctgaactctcgcctggt
cttcttgaagcaatcgtgaagcatgcaaatatggaacaccgtttgggaaatgtggaagct
gcctactctttatacgaacaggccattgccattgaaaaagtaaaagagcattcacagacg
ttacccatgttgtatgctcagtactctcggttcacttacctggtttctttgaatgcggaa
aaagctagagaaattttagatggagcactcgagcatatacaactgtcaagagcatttctt
gagtccatgatggttttcgagacaatacagccactgccaaagcgaattgatcacatagat
tcattggttgtgaagttcatagagcccagctcagagaaccccaattttgctagcgttgct
gacagagaagagctatctggcatctatttggagtttgttaatctctttggagatgcacag
tctatcaagaaggctgaggatcgacatgctaagctcttcatacctcttaggagcagcacg
tcagagttgaaaaaacgtcaagctgaggactttctatcttcagataaagtgaagctagct
aaagcttactctggtgttccatcgcccgcccagtcgatcatgggagcatatccaaatgca
cagagccaatggccagctggttatggtgcacagcctcaagcttggccaccagctacgcaa
gctactcagggacaacagtggccagctggttatacccaacagccgtacaatgcatatggt
ggttatggaactgctggctacgctaatccgcaagcgcccgtggtggcgccacaaactgct
gcttacggtgcttatccttctacgtatcctgctcagcaggccgtcccgccacaaagttac
gcgcatccaaccgtggcagcagtagcaccggctccgcagcctgcttcagttcctcaggcg
tattatgggagttactactga
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