Malus sylvestris (European crab apple): 126586261
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Entry
126586261 CDS
T09027
Name
(RefSeq) F-box protein SKP2A-like
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
126586261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
msyl04121
]
126586261
Ubiquitin system [BR:
msyl04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
126586261
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Gene cluster
GFIT
Motif
Pfam:
LRR_6
LRR_4
LRR_At5g56370
F-box-like
F-box
LRR_Zer-1
LRR_8
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
126586261
NCBI-ProteinID:
XP_050107023
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Position
10:891825..895491
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AA seq
388 aa
AA seq
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MVGQGNIKTEDLNLCFEKLMMFASASGGSASVGGKMKMEGRVMITDWKDIPIELLLQILA
LVDDQTVITASGVCSGWRDAVCLGLTRLSLSWCTKNMNSLVLSLAPKFTRLQTLILRQDH
KPQLQDNAVESIANFCHDLQVLDLSKSFKLSDRSLYALAHGCPNLTKLNISGCSAFSDIA
LEYLAGFCRKLEVLNLCGCVRSASDRALQAIGHYCSQLQSLNLGWCEDVSDVGVMCLAHG
CPDLRTVDLCGCVLISDDSVIALANRCPHLQSLDLYYCKNITDRAMYSLAQSVVKNKPAA
MWESRKARNDEEGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIISGCLNLTSV
HCACAVQAHRTANAFPHSAHGTNERGLG
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggtggggcaaggaaacatcaagactgaggacttgaacttgtgctttgagaagctgatg
atgtttgcaagtgcttctggtggaagcgcttctgttggtgggaaaatgaagatggaagga
agggtgatgatcaccgattggaaggatattccgattgagctgcttctgcaaatcctggcg
cttgtcgatgatcagacggtgatcacggcgtctggagtctgcagtggctggagagatgct
gtttgcttaggccttactcgtctctccctctcatggtgcaccaagaacatgaacagcttg
gtcctatctctagctcctaagtttacgagattgcagactctaatactgcggcaagatcat
aaaccccaacttcaggataatgctgttgagagcattgcaaacttctgtcatgacctgcag
gtcctggacctcagcaaaagcttcaagctcagtgaccgatctctatatgccttggctcac
gggtgcccaaatcttacaaaactaaacattagtgggtgctcggcattcagtgacattgct
cttgaatatcttgctggattttgccgaaaattggaagtcttgaatctttgtggttgcgtc
aggagtgcatcagacagggcattgcaggctattgggcattactgtagtcagttgcagtct
ctgaatcttggttggtgtgaggatgtaagtgatgttggagttatgtgtttggcacatgga
tgccctgatctcagaactgttgatttgtgcggctgtgtcctaatatcagatgatagtgtg
attgctttggcaaacaggtgtcctcatttgcaatcgcttgacctttactactgtaagaac
attacagacagagcaatgtattccttggcccagagtgtagtgaagaacaagcctgcggca
atgtgggaatcccggaaagccaggaatgacgaggaagggcttaggaccctcaacatcagc
caatgcacagcactcaccccttctgctgttcaggcggtgtgcgactcgttccctgcactt
cacacctgctctggaaggcattccctcatcattagcggctgtttgaacttgacgtcagtg
cattgtgcctgcgctgtccaagctcaccgcactgccaacgcctttcctcattcagctcat
ggaaccaatgaacggggattagggtaa
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