Malus sylvestris (European crab apple): 126586319
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Entry
126586319 CDS
T09027
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126586319
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126586319
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126586319
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
126586319
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
126586319
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
126586319
NCBI-ProteinID:
XP_050107088
LinkDB
All DBs
Position
10:complement(41472916..41487807)
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AA seq
976 aa
AA seq
DB search
MDSERLTLSRENPRVAFSPHTAGKAMPGAELAQKPQPPTPIVDRFRALLKQREEDLRVSP
DDEVSPPSTEEIVHLYEMVLSELIFNSKPIITDLTIIAGEQRDHGRGIANAICARILEVP
VEHKLPSLYLLDSIVKNIGREYAKFFSSRLPEVFCEAYRQVHPNQHPAMRHLFGTWSAVF
PPSVLRRIEEQLQFSPQANQQSSGLPPLRTSESPRPAHGIHVNPKYLRPLDSSDVDGVVS
KRLNSTGSVSHSPFALGSNQLHPSSTARLARSSSPSNIGLDRSLPSAVDEYAAEQSPRRF
VERASPSNSVFDYRLGGAMGKDEESNEWRRKRYLDGSQKWFDTSAAYNGVDHQNPRALID
AYGKDSADRSLNDKPLLVGQLGLNGLDHKATPMSWQNTEEEEFDWEDVTPNLADHGRGND
FLASTVPPSRSYSASHGTQNASSLEPDVRSTWSSQAHPPSAEQSSIIAEDSVPSLGFGRG
SSGAVSRFQSEKNHNMGSRYPQEAWNMPFHHLQPLQNPLNAKGRGGNIQTPFVTSGISSG
GEKMSAFNDKLLDVDTRLHGPITSRMGSSSVDSGTADSRSMMPVSMGLRPPVNAQNSHPP
RVHSVFAMQNQRNPYGSINYSNTVKNQGPYNPSYMPEQQLDGYENKESRSTKSTQVPQYR
PLQPQYRPPQEARENIFSSAETQVPSYLGVPPLNHGYTLRGPVPRQHLGIPTPYNPNGSS
QFSLPPLPPGPPPPSQGILSVQNPGSVVSSNQPGNSYSGLISSLMAQGLISLTKQSPVQD
SVGVEFNADLLKVRHESVISALYGDLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNR
KQKPSRKWFVNTSMWLTGAEALGTEAVPGFLPAETIVEKKSDEEMAVPADEDQNSCALCG
ETFDDFYSDENEEWMYKDAVYMNAPDGATGGMDRSQLGPIVHAKCRSESSVVSPEGFGQD
QRGIIEEGSQRKRLRS
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atggactcggaaaggctcacactttcccgagaaaaccctagagtcgctttttccccgcac
accgccggaaaggccatgcccggtgccgagttagctcagaagccccagcctccgactccg
atagtggaccgattcagggctctgctcaagcagcgggaggaggacctcagggtttcgccc
gacgacgaggtatcgccgcccagcaccgaagaaatcgtccacctttacgagatggtattg
tcggagctcatctttaattcgaagcccatcattaccgatctcaccatcatcgccggcgag
cagagagaccacggaaggggcatcgccaacgccatctgcgcccgcattctcgaggtcccg
gtcgagcataaactgccttcactgtatcttttagacagtattgtcaagaatattggccga
gaatatgccaagtttttctcttcccgtcttcctgaggtcttttgcgaggcatacaggcaa
gtacaccctaaccagcaccctgccatgcgccacctctttggcacttggtcagcagtgttt
ccaccttcagtccttcgcaggattgaagagcaactgcaattttctccgcaagcaaaccaa
caatcatcaggattaccacctttgaggacttctgaatctcctcgaccagctcatggcatc
catgtcaatccaaaatatttacgtccgttggacagttcagatgtagatggtgttgtatca
aaaagattaaactcaacaggaagtgtgagtcattcaccttttgccctggggtccaatcaa
ttacacccatcttcaactgctaggcttgcaagatcttcgtcgccttctaatattgggctt
gataggtctttgccatcagcagttgatgaatatgcagcagaacagtctccaagaaggttt
gttgagagggcttctccatctaattccgtgtttgattatagacttggtggagcgatgggt
aaggatgaggagtcgaatgaatggcggagaaaacgctatcttgatggtagtcagaagtgg
tttgatacttctgctgcatataatggagttgaccatcagaacccaagagctttaattgat
gcatatgggaaggacagtgcagatagaagtttaaatgataagcctctgctggttgggcag
ctgggcctgaacggtctagatcataaggcaactccaatgtcatggcagaatactgaagag
gaagagtttgattgggaagatgtgaccccaaatttagcagaccatggtcggggtaacgat
ttcttggcttcaactgtaccgccttctagaagctacagtgcaagccatggaacacagaat
gcaagctccttggagccagatgttaggagtacttggtctagtcaggcacatccaccttca
gccgaacagtcctctattatagctgaagattcagttccctcacttggtttcggtcgtgga
tcatcgggtgctgtgtctcgatttcagtctgagaaaaatcataatatgggttctcgctac
cctcaagaagcctggaatatgcctttccatcacttgcagcctttgcagaatccccttaat
gccaaaggaagaggagggaacattcagacgccctttgtgacaagtggtatatcttcaggt
ggtgagaaaatgtctgcctttaatgacaagcttctagatgttgatacacgacttcatggg
cccattacatcaagaatgggttcctctagtgttgactctggtactgctgactctcgatct
atgatgccagtgtcaatgggtttaaggcctccagtaaacgcgcaaaattctcaccctccc
cgagtgcactcagtttttgcaatgcagaaccagaggaatccgtacggttcaataaattat
agcaatactgtaaaaaatcaaggcccatataatccttcatacatgccggagcagcagtta
gatggctatgaaaacaaggagtcaaggtcgacaaagtcaactcaggtgccacaatatcgt
cccttacaaccacagtatcgtccacctcaggaggcacgggagaatattttttcgtctgca
gaaactcaggtgccatcttatttaggggtaccacccttaaatcatggatacactttgcga
ggtcccgtacctcgtcaacacttgggcataccaaccccctataacccaaatggcagttct
cagttctccttgccacctctaccaccaggtcctcctcctccctcgcaaggcatactttcc
gtccaaaaccctggttcagttgtctctagcaaccagcccggcaattcctattctggtttg
attagttctctcatggctcaaggtttgatctcattgacaaagcaaagccctgtccaggat
tctgtaggagtcgagtttaatgccgaccttctcaaggtgcgtcatgaatctgtaataagt
gccctatatggtgatctccctagacaatgcacaacctgtggccttaggttcaagtgccaa
gaagagcacagtagtcatatggattggcatgtaacaaagaatcgtatgtctaaaaaccgc
aagcagaagccctctcgcaaatggtttgtaaatacaagcatgtggctcactggtgcagag
gcattgggtactgaggcagtccctggatttttgcctgccgagaccatagtggaaaagaaa
agtgatgaagaaatggctgttcctgccgatgaggatcagaattcgtgtgcattatgtgga
gagacttttgatgacttttatagtgatgagaatgaggagtggatgtataaagatgctgtg
tacatgaatgcacctgacggagcaacaggaggcatggataggtcacaattaggtcctatt
gtgcatgctaaatgcagatccgagtcaagtgtggtctcccctgaaggttttggacaagat
caaaggggaattattgaagagggtagtcaaagaaaacgattgcggagttaa
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