Malus sylvestris (European crab apple): 126586658
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Entry
126586658 CDS
T09027
Name
(RefSeq) putative transcription elongation factor SPT5 homolog 1 isoform X1
KO
K15172
transcription elongation factor SPT5
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
126586658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126586658
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126586658
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
126586658
RNA polymerase I system
126586658
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
126586658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KOW1_SPT5
Spt5-NGN
KOW6_SPT51-2
KOW
KOW2_Spt5
KOW4_SPT5
KOW7_SPT5
KOWx_SPT5
KOW5_SPT5
Spt5_N
GPKOW_C
DUF4438
ProQ_C
Motif
Other DBs
NCBI-GeneID:
126586658
NCBI-ProteinID:
XP_050107536
LinkDB
All DBs
Position
10:1367165..1376126
Genome browser
AA seq
1045 aa
AA seq
DB search
MARHRDEYDDEMEEEEEYDPDQAIDEDDEEEEEEERGGGSRRPSQKRRRSDFIDDVAEED
DDEEEEEYGEDDEAYGGGGGASRKRKNKRPSGSQFLDIEAEVDTDEEEEDEEGDDDFIAD
NAPDLPEEEDGRRMRHRPLMQEDEQEDLEEIERNLQERYGKSSHREYDEDTTDVDQQALL
PSVRDPKLWMVKCAIGREREVAVCLMQKYIDKPELQIRSVIALDHLKNYVYVEADKEAHV
REACKGLRNIFGQKIMLVPIREMTDVLSVESKAIDLSRDTWVRMKSGTYKGDLAQVADVD
NVRQRVTVKLIPRIDLQALANKMDGREVVRTKAFVPPPRLLNIEEARELHILGDRKQDRM
TGDYYQTINGMMFKDGFLYKAVSIKSISTQNIHPTFDELEKFRKPSENGDGDIASLSTLF
SNRKKGHFLKGDAVIVVKGDLKNLKGWVEKVEEDTVHIRPEMKELPKTLAINEKELCKYF
EPGNHVKVVSGTQEGATGMVVKVEQHVLIILSDVTKEHIRVFADDVVESSEVTSGITRIG
AYELHDLVLLDNNSFGVIIRVESEAFQVLKGVPDRPEVALVKLREIKCKIEKSFPVEVKY
KHKVSVKDVVRVIDGPCEGKQGPVQHIYRGVLFIFDRHHLEHAGFICVKSHNCALVGGSR
ANGDRNGNSNSRYDHLRTPPRVPQSPNRFSRGGPPSNYGGRNRGGRGHDGLVGTTVKIRQ
GAYKGYRGRVVEVKGPNVRVELESQMKVVTVDRNCISDNVTVTTPYRDTSRYGMGSETPM
HPSRTPLHPYMTPMRDAAATPIHDGMRTPMRDRAWNPYAPMSPARDNWEEGNPASWGASP
QYQPGSPPSRAYEAPTPGSGWANTPGGNYSEAGTPRDSSSAYANAPSPYLPSTPGGQPMT
PNSASYLPGTPGGQPMTPGTGGLDMLSPVIAGGDSEGPWFLPDILVNVHNSGEETTGVVR
EVLPDGSCRVAIGSGGNGETIIALPNEMEAVVPKKSDKIKIMGGSLRGATGKLIGVDGTD
GIVKVDDTLDVKILDLAILSKLAQS
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtcacagagacgaatatgacgacgagatggaggaagaggaagaatacgacccg
gaccaagctatagacgaggatgacgaggaggaagaggaggaggaacgaggcggaggaagt
cggcggcccagtcagaagcggaggagatcggatttcatagacgatgtagcagaggaggac
gatgacgaggaggaagaggagtacggtgaggatgacgaggcttatggtggtggtggtggt
gcgagtcgtaagaggaagaacaagaggccctctgggtcgcagtttctcgacattgaggcc
gaggtcgataccgacgaagaagaagaagacgaggagggggatgatgactttattgctgat
aatgcacctgatctacctgaagaagaggatggtagaaggatgcgtcatcgaccgttgatg
caagaagatgagcaagaagatcttgaagagattgaaagaaatcttcaagagcggtatggg
aagtcaagtcatcgagagtatgatgaagacacaactgatgtggatcaacaagctctttta
ccttctgttagggacccaaagttgtggatggtgaaatgtgcgattggtcgtgagcgggag
gtagctgtttgcttaatgcaaaagtatatcgataaacctgaactgcagatcaggtctgtt
attgctcttgaccaccttaaaaactatgtatatgttgaagcggacaaagaagcccatgtg
agggaggcttgcaaaggtctgcgcaatatatttggccagaaaataatgcttgtcccaatt
agagaaatgactgatgttctttcagttgaaagcaaggctattgatctttctagggatacg
tgggtcagaatgaagagtgggacatataaaggagaccttgcccaggttgcagatgtggac
aatgtgcggcagagagttacagttaaattaattccaaggattgatttacaagctcttgca
aataaaatggatggcagagaagttgtgagaacaaaagcatttgttcctcctccacgctta
ttaaatattgaggaagcaagggaactgcatattcttggagatcgtaaacaagatcggatg
actggtgattattatcagacgattaatggcatgatgtttaaagatggtttcctgtataaa
gcagtatcaatcaaatcaattagtactcagaacatacatcccacgtttgacgaacttgaa
aaatttcggaagcccagcgagaatggtgatggagatattgcaagtctgtcaactttattt
tcaaacagaaagaagggacactttctgaagggcgatgcagttattgttgtcaagggagat
ctaaaaaatttgaaaggatgggttgagaaagttgaggaggatactgttcatatcagacct
gaaatgaaagaactcccaaaaacccttgccatcaatgaaaaagagctgtgcaaatacttt
gaacctgggaatcatgtgaaagttgtatctggcactcaggaaggtgcaactggtatggtt
gttaaggttgagcagcatgttctcatcatcctatctgatgtaacgaaagaacatatccgt
gtgtttgctgatgatgttgtggagagctctgaggtgacatctggtattaccagaattggg
gcatatgaacttcatgatctcgtgctactggataataatagcttcggtgtaatcatacgc
gtagaaagtgaagcattccaggttcttaagggagttcctgatagacctgaggttgcactt
gtcaagttaagagagatcaaatgcaagattgagaaaagttttcctgtggaagttaagtat
aaacacaaagtatccgtgaaggatgttgtgagggtcattgatggcccttgcgaggggaaa
cagggtcctgtgcaacacatatacaggggagtcttgttcatctttgatcgccaccacctg
gagcatgcaggctttatctgtgttaagtctcataattgtgctcttgtgggaggttcacgt
gctaatggtgatagaaatggtaactccaattcacgatatgaccacctcagaactcctcct
cgggttcctcagtccccgaataggttttctagaggaggccctccatctaactatggagga
aggaatagaggtggacgagggcatgatggcttggttgggacgacagtaaagattcgccag
ggtgcctataagggctatcgtggacgtgttgttgaggttaagggaccaaatgtacgggtt
gagttggagtctcaaatgaaggttgttacagttgatcgtaattgtatttctgataatgtg
actgttaccacaccatatcgtgatacatctcgctacggtatgggaagtgagactcctatg
catccttctcgaactccactccatccatatatgactcctatgagggatgctgcagcaaca
cctatacatgatggcatgaggactcctatgcgtgaccgagcatggaatccctatgcacct
atgagtccagctagggataactgggaggaaggaaaccctgcttcttggggtgctagccca
cagtatcagccaggaagtcctccttcgcgggcatatgaagcaccaactcctggttcaggt
tgggcaaacactcctggtggaaattatagtgaagctggtacaccgagggacagtagttcc
gcttatgcaaatgctcctagcccttacttgccatcgactccaggtggccagcctatgaca
ccaaattcggcatcctaccttcctggaacccctggagggcagccaatgacaccgggcact
ggtggtctggatatgttgtctcctgttatagcaggtggggacagtgaaggaccctggttc
ctcccagacatattggtcaatgtccacaattctggagaggaaactactggagttgtgaga
gaagtgcttccggatggctcctgtagggtagctattgggtcgggtggcaacggggaaact
ataatagcacttcctaatgaaatggaggcagtggtaccgaagaaaagtgataagataaag
atcatgggtgggtcactacgaggtgcgaccggtaagctgattggtgttgatggcacagac
ggaattgtaaaggtagatgacactcttgatgttaagattttagacttggctattttgtca
aaactagcccaatcataa
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integrated database retrieval system
