Malus sylvestris (European crab apple): 126586836
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Entry
126586836 CDS
T09027
Name
(RefSeq) endoribonuclease Dicer homolog 3a-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
msyl03036
]
126586836
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
126586836
microRNA pathway
RISC loading complex
126586836
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
ResIII
Helicase_C
PAZ
dsrm
DND1_DSRM
SWI2_SNF2
Dicer_dsRBD
SNF2-rel_dom
nSTAND3
Motif
Other DBs
NCBI-GeneID:
126586836
NCBI-ProteinID:
XP_050107754
LinkDB
All DBs
Position
10:27961630..27970175
Genome browser
AA seq
1638 aa
AA seq
DB search
MESNGIMEPTVLNQFIPRRYQVKVFEVAKRKNTIAVLETGAGKTMIAVMLIKHVAEEMMS
IIPSSGVKKLIIFLAPTVYLVTQQYKVIKNSTTLEVEEYYGAKGVDEWTRSCWETEANTH
DILVMTPQVLLDAMRNAFLNLEMFSLIIFDECHRATGNHPYTKIMKDFYHQSVNRPKIFG
MTASPVIRKGVSSAMDCEDQISALESMLDAQVYTVEDRTEIETFVPSAVHKCRFYKQAPS
AYSDLKEKMEALLSKYASELELQEQMPSQYQDISDKIKMLRKRLHNDHMKILYCLDDLGI
VCAYEAVKVCLENVPDAEEECQFYRECSSYLKIFLDEVLLMIAGFLQPGCELHANFESDY
TKACDLGFISPKLYELLQIFQSFGTGSKVQCLIFVERIITAKVIEIYVKKVRCLSHLTVS
YVTGSNGSADALSPKLQKETMESFCSGKVNLLFATDVVEEGIHVANCSCVIRFDLPKTVR
SYIQSRGRGRKNDSQYILMLERSNKKQIDQMFDIIRSEHSMTDTSRNRDPEVCTLKACCF
EETKSYRAKVTGASVTTDSSVSLIYRYCEKLPGDRYFTPKPTFDFEISEGLYQCRITLPP
NAAFLTTVGPLSSNTHLSKQLVCLEACKKLHEMGALDDHLLPLVQEPLEDDLIPERRELS
AGAGTTKRKELHGTTSIRALCGTWGEKLDTVFEAYKFDFSCSIVDETYSGFVLLIESKLD
DDVGNIEMDLQLVSRMVKSSVSSCGKCYLSAEQVTQAKRFQEFFFNGVFGRLFFGGESEG
TTREFLLQTETKSLWNSAYMYLLLPVDTLDTSKVNWRGISSSVNVVEFLKKQYSTHSKCF
NGDHSELPLSRTGSSMTQSKASNHIHFANSSIDADNLQDMLVLAIHTGRIYSIIEVVHGK
SAESSSEENIDDASSTYSYAQHFKTKYGISLVYPGQPLLRLKQSHNPHNLLGAEAGASSQ
DGRVIKEQAHVRMPPEILVSIDFQVDVLRSCYLLPSVMHRLESLMLASQLREEINGQTNN
FKISSSLILEALTTLRCCEDFSLERLELLGDSVLKYAVSSYLFLRYPEKHEGQLTARRTR
VICNSNLHKLGIQRKIQGYIRDSAFEPRRWAAPGQLSRFPDPCKCGVDALEVPLDSRFQT
VEAVKVGKFCDSGHRWMNSKTIADCVEALIGAYYVGKGLFAALHVMKWLGIDSDFEPSLA
TEAITRASLRSYYPKHDDIAALELKLDYQFSVKGLLQEAITHASEQKLGASYCYQRLEFL
GDSVLDVLITQYLYDSHTTINPGWLTDLRSAAVCNENFARAAVRKKLHPHLQHCSGLLLN
HITEYEKLCTAEALNTTSLLEDVKGPKALGDMVESIAGAIYMDSNLDLNKVWRVFKPLLS
PIVTPSTLQLHPLRELTELCGSLGYFVKENCTKEDSLEHVEMTLQLEDGLLVGNGYDRSK
KAAKQKAARQLLKELQGCHSVFKRRKLDPDRVDELSSEGMEIEHCSQLNDTHSLESINRI
ESPYAESRTGPTPTNFGPNKIYSHNIVTPSLHAIASISTRKGAARASLFELCKRMQWPMP
TFKTTEHKSRTPIEFGEGSEKRIGFNSYASEISLQIPNYGTVVCRGDPRADKKSSYDSAV
VALLYKLQRQGKLTIGCS
NT seq
4917 nt
NT seq
+upstream
nt +downstream
nt
atggagtctaatggtatcatggagcccactgttcttaatcagttcatccctagaaggtac
caagtgaaagtgtttgaggttgcaaagcggaagaacacgattgcggtgctggaaacagga
gctgggaagacgatgatagctgtgatgctcatcaagcacgttgctgaggagatgatgagt
atcatcccctcctctggagttaaaaagttgatcattttcttggctccgacagtttatctt
gtcactcaacaatacaaggttattaaaaattccacaactcttgaagtggaagagtactat
ggagccaagggagtggatgaatggacccggagctgttgggaaacagaagctaatacacat
gatatactggtcatgacaccacaggttctcttggatgccatgaggaatgctttcttaaac
ttggaaatgtttagcttgataatcttcgacgaatgtcatcgcgctacaggcaatcatccc
tatacgaaaataatgaaggatttttatcaccaatctgtgaacaggccaaagatttttggg
atgacagcgtcccccgttataagaaaaggtgtctcgtccgccatggattgtgaggatcaa
atatctgcacttgaaagcatgttggatgctcaggtttacactgtagaagacaggactgaa
atcgaaacgtttgttccctcagcagtccacaaatgtaggttctacaagcaagcaccgtcc
gcctattcggatctgaaggaaaagatggaagccttgctgtcgaagtatgcttctgagttg
gagttgcaagagcaaatgccaagtcagtaccaagacatcagtgacaagataaagatgttg
cgaaagcggttacacaatgaccacatgaagatcttgtactgccttgatgaccttggcatt
gtatgtgcatatgaggctgtcaaagtttgcctagagaatgtccctgatgccgaagaagag
tgccagttctatagagaatgttcttcgtatttgaaaatttttctcgatgaagtcttgctt
atgattgccggatttcttcaacctggctgcgaacttcatgcaaactttgagtctgactat
acaaaggcgtgcgatttgggtttcatatctccaaagttatacgaacttcttcaaattttc
cagtcatttggaaccggtagcaaagttcaatgcctcattttcgtagagcgaattattaca
gcgaaagtgattgaaatatatgttaagaaagtgcggtgcttatctcacttgacggtttca
tacgtgactggaagtaacggatcagctgatgcgctatcaccgaagctgcaaaaggaaact
atggaatccttttgctccgggaaggtcaatctgttgttcgctacggatgtagttgaggag
ggaatacatgttgcaaactgttcctgtgtgattcgttttgacttgcccaagacagttcgt
agttatatccagtcccggggaagaggtcgaaaaaatgactcccaatatatcctaatgctt
gaaaggagcaacaagaagcaaatagatcaaatgttcgacatcatcaggagcgaacattcg
atgacagatacatctagaaacagagatcctgaagtgtgcaccttaaaagcttgttgtttt
gaggaaacaaaatcgtatcgtgcaaaagttactggagcatcagttacaacggattcaagt
gtcagtcttatatatcgatactgcgaaaagctcccgggagataggtactttactccgaaa
ccaacttttgacttcgaaatttctgaagggttgtaccagtgtagaataacattaccccca
aatgcagcttttctaacaacggtcggtccactgagcagcaacacgcatttgtccaagcag
ctagtgtgcttggaagcttgtaaaaaactccatgaaatgggagccttggatgatcatctt
ctcccgcttgtccaagagcccttagaagatgatctaattccagaaagaagagagttatct
gctggtgcaggaacaacgaaaagaaaggaattacacggcacaacatccatccgggcatta
tgtggaacttggggagaaaaacttgatactgtttttgaggcctataagtttgatttctcg
tgtagtatcgttgatgagacatattcaggatttgttctactaattgagtcaaaactcgat
gatgatgtgggaaatatcgaaatggatcttcaactcgtctcaaggatggttaaatcttcg
gtctcttcatgtggaaaatgttatctgagtgcagagcaggtaacgcaagccaagcgcttt
caagaatttttctttaatggtgtgtttgggagattgttttttgggggagaatcagaaggg
acaacgcgagaatttttactccagacagaaacaaaatcactctggaactcagcatatatg
tatttgcttttacccgttgacacattggacacttcaaaagtgaactggagagggatcagt
tcttctgttaatgtggtagaatttttgaagaaacaatactccacgcattccaagtgtttt
aatggtgatcacagcgagttgccactttctaggactggttcatccatgacacagtcgaag
gcttcgaatcatatccattttgctaatagttcaattgatgccgataatctccaagatatg
ctagtattggctattcacacgggacgtatctattcaatcatcgaagttgtccatggaaaa
tctgcagaaagttcttcggaggaaaatattgatgatgcatcatcgacatacagttatgct
cagcacttcaaaacgaagtatgggatttcacttgtttatcccggacagcctttgctgcgg
ttaaagcaaagtcataatccgcataacttgcttggtgccgaagcaggtgcttcatcacaa
gacggtcgagtaatcaaggaacaagctcatgttcgtatgcctcccgagatcctagtcagt
attgattttcaggtggatgttctacgatcatgttacttgttaccgtcagtaatgcaccgg
ctggagtcactaatgctagctagccagctcagggaagagatcaatggccaaactaacaac
tttaaaatatcaagttcattgattctggaagcactcacaacacttaggtgttgtgaagat
ttctcattggaacgtttggagttgctcggagattcagttctcaagtatgctgtgagctcc
tacctttttctcagatatcctgagaaacatgaaggacaactaacagctcggcgtacaagg
gtaatatgcaactccaacctgcataaactaggaatccaacgaaagatacagggatatata
cgtgacagcgcatttgaaccacgccgttgggcagctccagggcagctgtctagattccct
gatccgtgtaaatgcggagtggacgccttagaagtgcctttggacagcagatttcaaact
gtagaagcggtaaaggtcggaaaattctgcgatagtggccatagatggatgaactcgaaa
accatagcagattgtgttgaggccctcataggagcctactatgtcggcaaaggactgttt
gctgcactacatgtgatgaagtggcttggtattgattctgattttgaaccctcattagcc
actgaagccattacgagggcttccctccgatcttactacccaaaacatgatgacatcgct
gccttggagttgaagcttgactaccaattttcggttaagggtttgttacaggaggccata
acacatgcctctgagcaaaaactaggtgctagctactgttaccagaggctcgagtttctt
ggcgactctgtgttggatgtgctaatcacacagtatctctatgatagccacacaactatt
aatccgggatggttgacagacttgcgatcagctgccgtttgtaacgaaaactttgcccga
gctgccgtgagaaagaaacttcacccacatcttcaacattgctccgggttacttctgaat
catatcacagagtatgagaagttgtgtactgctgaagctcttaacaccaccagcctactt
gaagacgtaaaaggccctaaagctcttggggacatggtggaaagcatagctggggctata
tacatggacagcaatctcgatcttaacaaagtatggagggtgtttaaaccgctattatct
ccgatcgtgaccccttccactctgcaattacatccgctgcgtgaattgaccgagttatgt
ggttctctcgggtactttgtgaaagaaaattgtactaaagaggattcattggagcatgtg
gaaatgactttgcagctggaagatggtcttttggttgggaatgggtacgatcggagcaag
aaagctgctaaacagaaagcagctcgtcaactgttgaaggagctccagggttgccattca
gtgtttaaaaggagaaaacttgatcctgaccgtgtagatgagctctcttccgaaggcatg
gagattgaacactgcagccaactgaatgatactcattctttagagtcgatcaatcgaatc
gaatcaccatatgcagagtcgagaacaggtcctaccccgaccaattttggtcctaacaaa
atctacagtcacaacattgtaaccccaagtttacatgctatagcttcgatcagcacgagg
aaaggagcagcgcgggcttctctctttgagctgtgtaagagaatgcagtggccaatgcct
acattcaaaacaacagagcataaatcgagaactccaatcgaatttggtgagggctctgaa
aagagaatcggtttcaacagctacgcatcggaaataagtttgcagataccaaactatggg
actgttgtatgcagaggagatcctagagctgataagaagagttcatatgactctgcagta
gttgccctgctttacaagcttcaacgacagggaaaacttacaattgggtgctcttga
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