Malus sylvestris (European crab apple): 126587026
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Entry
126587026 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126587026
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126587026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126587026
03041 Spliceosome [BR:
msyl03041
]
126587026
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
126587026
Spliceosome [BR:
msyl03041
]
Complex B
Other components
Prp19-related factors
126587026
Complex C
126587026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
NRDE-2
Motif
Other DBs
NCBI-GeneID:
126587026
NCBI-ProteinID:
XP_050107953
LinkDB
All DBs
Position
10:complement(40120092..40124947)
Genome browser
AA seq
920 aa
AA seq
DB search
MAISQELYPSQDDLLYEEELLRNPFSLKLWWRYLIARAESPFKKRFIIYERALKALPGSY
KLWYAYLRERLELVRNLPITHSQYETLINTFERALVTMHKMPRIWIMYLQTLTEQKLVTK
TRRTFDRALCALPVTQHDRIWEPYLMFVSQKGIPIETSLRVYRRYLKYDPTHIEDFIEFL
INSSLWQEAAERLASVLNDDKFYSIKGKTKHRLWLELCDLLTKHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLHEKARDIFEEGMTTVVTVRDFSVIFDSYAHFEEIVL
AHKMETADLSDEEEDEENGVAEDRNEEEEDLRLDINLSVAELEKKMLDGFWLHDDKDVDL
RLARLDHLMDRRPILANSVLLRQNPHNVEQWHRRVKLYEGNPTKQILTYTEAVRTIDPMK
AVGKPHTLWVAFAKLYENHNDIVNARVIFDKAVQVNYKTVDNLASLWCEWAEMELRHKNF
KGALELMRRATAEPSVEVKRRVAADGNAPVQMKLHKCLRIWAFYVDLEESLGKLESTRAV
YERILDLKIATPQIIINYASLLEEHKYFEDAFKVYQKGTKIFKYPHVKDIWITYLSKFVK
RYGKKELERARELFEEAVQAAPADAKKPLYLQYAKLEEDYGLSKRAMKVYDEATKAVPNH
EKLGMYEIYIARATEIFGVPKTREIYQQAIDSGLPDKDVKTMCLKFAELEKSLGEIDRAR
AVYTYASQFSDPRSDVDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYM
MQKDQKLYIDEAKDQLKQAGVPEDEMAALERQLAPVANDTTTKDSSRIGFVSAGAIQQTD
GGIKVATNPEDIELPEENDSEDDERVEIQIAQKEVPDAVFGELANKRKEAEKDEGGDADT
KDNDSRLGALERIKRLKRGA
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggcgatttctcaggagttgtacccatcgcaagacgacctcctctacgaagaggagctt
ctccgcaaccccttcagcctgaagctatggtggcgctacctaatcgctcgagccgaatct
ccgttcaaaaagcgcttcataatctacgagcgagccctcaaggctctgcccggaagctac
aagctctggtacgcttacctccgcgaacggctcgagctcgttcggaacttgcccatcact
cactcgcagtacgaaaccctaattaacacgtttgaacgagctctggtgacgatgcacaag
atgcccaggatttggattatgtacttgcagactctgacggagcagaaattggtcaccaag
acccgccggaccttcgacagagcgctgtgtgcacttcctgtgacgcagcacgaccgcatt
tgggagccctacctgatgtttgttagccaaaagggcatcccaatcgagacctcgcttcgg
gtttatcgcaggtatttgaaatatgaccctacccatattgaagatttcatcgagttcttg
attaattctagtctttggcaagaggctgccgagaggctcgcttcggtgttgaatgatgat
aagttttactcaataaaggggaaaacgaaacataggctgtggttggaattgtgtgatttg
cttactaagcatgccactgaggtttcaggcctcaatgtagacgctataattagaggtggg
attaggaagtttacggacgaggtgggtcggttgtggacctctcttgcggactattacatt
aggaggaatttgcacgagaaggcgagggatatattcgaggaaggtatgactactgtggta
acggtgagagattttagtgtgatttttgattcgtatgctcattttgaagagattgtgctt
gctcataagatggaaactgctgatttgagtgatgaggaggaggacgaagaaaatggggtg
gcagaggatagaaatgaggaggaagaagatcttcgattggacattaacttgtctgtggct
gagcttgagaagaaaatgcttgatgggttttggctacatgatgataaggatgtagatttg
agattagctcgattggaccatctcatggatagaagacctatactggcaaatagtgttctt
ttgcgacaaaatcctcataatgtagagcagtggcaccggagagtgaagctatacgagggc
aatcccacaaagcagatacttacatacactgaggctgtgaggacaattgatccaatgaaa
gcagttgggaagcctcacacattgtgggttgcttttgctaagttgtacgagaaccacaat
gatattgtcaatgctagagtgatttttgataaagcagtgcaggtgaattacaagaccgtg
gataatttggctagtctttggtgtgagtgggcagaaatggaactgaggcataagaatttc
aaaggagcactggaactgatgaggcgggctactgcagagccatctgttgaggtgaaacga
agagtggctgctgatgggaatgcgccagttcagatgaagctgcataaatgcttgagaatt
tgggcattttatgtagacttggaggagagcctgggtaaattagagtccactcgagctgtt
tacgagaggatattggatttgaaaatagctacaccacagatcataatcaattatgcatcg
cttcttgaggagcataaatactttgaagatgcattcaaggtttatcaaaaaggtactaag
atattcaagtatccacatgtcaaagacatatggattacatatctttccaaatttgtaaag
agatatgggaagaaagaactggaacgcgcaagagagctatttgaggaggctgttcaagcg
gctcctgccgatgcaaagaaacctttgtatcttcaatatgcaaagctggaggaggattat
ggtctatcaaagcgggcaatgaaggtctatgatgaagcaactaaggctgttccaaaccat
gagaaactgggcatgtatgaaatctacattgctcgtgctacagagatatttggcgtcccg
aagacgagggaaatataccagcaggccatagactctggtcttccagacaaagatgtgaag
acaatgtgtttaaagtttgctgagcttgagaagagtttgggagaaatcgatcgtgctcgg
gcagtgtatacatatgcttcacagttttcagatccacgatctgatgtggacttctggaac
aaatggcatgagtttgaggtccaacacggaaatgaagatacctttcgagagatgcttcga
attaaacgaagtgtttctgcaagctatagccagacccattttattctacccgagtatatg
atgcaaaaggatcagaagctgtacatagacgaggcaaaagaccagctgaaacaggctgga
gtccccgaagatgaaatggctgctctagagaggcagttggcaccggtggccaacgatact
accactaaagatagcagtagaataggctttgtgagtgcaggagcaattcagcagactgac
ggagggatcaaagttgctacaaatcctgaagacattgagctaccagaagaaaacgattca
gaagacgatgaaagggttgaaattcaaattgcacagaaggaggtcccggatgctgttttt
ggagagttggctaacaagagaaaggaggccgaaaaagatgagggcggagatgctgatacc
aaggacaatgacagccgccttggtgcccttgagagaataaaaaggctaaaacgaggtgcc
tga
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