Malus sylvestris (European crab apple): 126587202
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Entry
126587202 CDS
T09027
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03020
RNA polymerase
msyl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
126587202
09124 Replication and repair
03420 Nucleotide excision repair
126587202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
msyl03021
]
126587202
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126587202
Enzymes [BR:
msyl01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
126587202
Transcription machinery [BR:
msyl03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
126587202
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
126587202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
126587202
NCBI-ProteinID:
XP_050108186
LinkDB
All DBs
Position
10:39434494..39509237
Genome browser
AA seq
1193 aa
AA seq
DB search
MEEEHEYDDQQYMEDDDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVD
ESADIEIRPESQHNPGHQPDFAETVCKISFGQIYLSKPMMTESDGETATLFPKAARLRNL
TYSAPLYVDVSKRMIKKGHDGEELTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTEL
GECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPS
TMFVRMLARTSSKGGSSGQYIKATLPYIKGEIPIIIVFRALGFVADKDILEHICYDFSDT
QMMELLRPSLEEAFVIQNQQVALDYIGKRGANVGVSRDKRIKYAKEILQKEMLPHVGVGE
FCETKKAYYFGYIVHRLLLCALGRRPEDDRDHYGNKRLDLAGPLLGGLFRNLFRKLTKDV
RAYAQKCVDNGKDLNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYA
STLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGS
AAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVRTLRKLRRRVDV
NTEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKRDIHALQQRESPEDAGWHDL
VAKGYIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIP
FPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQL
PAGINAIVAISCYSGYNQEDSVIMNQSSVDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRP
DRANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPMAQDEAPGQATSRYTRRDHS
ISLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQED
MPWTVEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKA
LHSCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQP
AEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLIAIANLKKNS
FECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKDIKPAKNQKKKGG
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggagcacgagtacgacgatcagcagtacatggaggacgacgacgaagacgaa
atcacgcaggaggacgcgtgggccgtcatctctgcctacttcgaggagaagggcttggtg
cgccagcagctcgactcgttcgacgagttcattcagaacacaatgcaggagattgtcgac
gagtcggccgatatcgagattcggcctgagtcgcagcacaacccggggcaccagcctgat
ttcgccgagactgtatgcaagattagctttggtcagatttatttgagtaagcccatgatg
accgaatctgatggagaaactgcaaccttatttcccaaagctgcaaggctgagaaatctg
acgtactcagcacccttgtatgtggatgtctcaaagaggatgataaagaaaggacacgat
ggcgaagaactcaccgagacccaggatttcaccaaagtattcattgggaaggttcctata
atgcttcggtctagttattgcacactgtaccagaattcagagaaagatttaactgagctg
ggagagtgtccatatgatcaaggtggatattttattataaatgggagtgaaaaggttctt
attgctcaagagaagatgagcaccaatcatgtctatgtgttcaagaagaggcagccgaac
aagtatgcctatgtggctgaagttcggtctatggcggagtctcaaaacaggccgcccagt
accatgtttgttcggatgcttgcccggactagttctaaagggggttcttcgggacagtat
atcaaagctacacttccttatattaaaggggaaattcctattatcatcgttttccgggct
cttgggtttgttgccgataaagacatcctcgagcacatatgttatgacttttctgatact
caaatgatggagttgctcagaccttctttggaagaagcatttgtgattcagaatcaacag
gttgcattagattatattggaaagagaggtgcaaatgttggtgtaagtagagacaagaga
atcaagtacgcgaaagagattctacaaaaggaaatgcttccacacgttggtgttggagaa
ttttgtgagacaaagaaagcttactattttggatatatcgttcacaggcttctactctgt
gcacttggtcggaggccagaggatgacagggatcattatggaaacaagcggcttgatctt
gctggtcccttacttggaggcttgtttagaaatctattcaggaagttgactaaggatgtg
agagcttatgcacagaagtgtgttgacaatggaaaggatcttaatctgcaatttgccatc
aaagctaaaaccatcacgagtggcctcaaatattcacttgccactggaaactggggacaa
gcaaatgcagctggtacaagggctggagtgtcgcaggtgttaaatcgtttgacatacgca
tccaccctctcacacttgagaagactgaattctccaatagggcgtgaagggaaattggct
aaaccacgtcagctgcataattcgcaatggggaatgatgtgcccagctgaaacacccgaa
ggccaagcatgcgggcttgtcaagaatcttgcgttgatggtatacataacggtaggatca
gctgcatatccaatcttggaatttttggaagaatggggtacagaaaactttgaggaaatt
tcacctgcggttataccccaagctacaaaaatttttgttaacggctgttgggttggaatc
catcgtgatcctgaaatgttggtgagaacattaagaaagctaaggcgacgggttgatgtc
aacactgaagttggggttgtgagggatatccgtctgaaagaattgcggatatatactgac
tatggccgttgcagtcgtccattattcattgtggacaaacagaggcttctcataaagaag
cgagatattcatgcattgcagcagagggaaagccctgaagatgctggttggcatgacctt
gtagcgaagggatatattgaatatattgacactgaagaagaggagactacaatgatttcc
atgacaattaatgatcttgtccaagcaagactcaatcctgaggaggcatattcggacact
tatacacattgtgaaatccacccatcacttattttgggtgtttgtgcttctattatacca
tttcctgatcataatcagtctccacgtaatacgtatcaatctgctatggggaagcaagct
atggggatttatgtcaccaattatcagttccggatggatacattggcgtatgttttatac
tatcctcagaaaccacttgtcaccacacgagccatggagcatctccacttccggcagctt
cccgctggcatcaatgctattgttgccatttcctgttattccggttataaccaggaagat
tctgtcattatgaatcaatcctctgtggaccgtggattcttccggtcactattcttccga
tcttatagggatgaggagaaaaagatgggaacccttgtcaaagaggattttgggcgtcct
gacagagccaatactatgggtatgcgacatggttcttatgacaaattggatgatgatggt
cttgctcctcctggaactagggtttcaggtgaggatgtcatcataggaaagaccacaccc
atggctcaggacgaggctccagggcaagcgacttcgcgttacacgcggcgtgaccacagc
ataagcttgcgccacagtgaaaccggcatagttgatcaggttctactgacgaccaatgcc
gatgggttgcggtttgtcaaagtaagggtgaggtcagtcagaataccgcagattggtgac
aaattcagtagcagacatggacagaaggggacagtgggcatgacttatacgcaggaagac
atgccatggactgtggaaggggtcacacctgatataatcgtgaacccacacgctattcca
tctcgtatgacaattggtcagctgattgagtgtatcatggggaaggttgcagctcacatg
ggaaaggaaggagatgctactccttttacagatgtgacggtggacaatatcagtaaagct
cttcacagttgtggttatcaaatgcgtggattcgagaccatgtataatggtcacacgggc
aggcggctcagcgctatgatattccttggccccacatattaccaaagactgaagcacatg
gtcgacgacaagatccattcacgtggacggggcccagtgcagatcctcacaaggcagcca
gctgagggacggtctcgtgatggtggtctacgatttggagaaatggaacgagattgcatg
attgcccatggtgctgcccactttctgaaagaaagattgttcgaccagagtgatgcatat
agggttcatgtctgcgagcgttgtgggttaatagctattgcaaatctcaagaagaattcg
tttgagtgcaggggttgcaagaacaaaactgacattgttcaggtttacattccttatgcc
tgcaagctgctattccaagagctcatgtcaatggccatagcgccaagaatgctcacgaag
gacataaagccggccaaaaaccaaaagaagaaaggaggctga
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integrated database retrieval system
