Malus sylvestris (European crab apple): 126588233
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Entry
126588233 CDS
T09027
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126588233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126588233
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126588233
Spliceosome [BR:
msyl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
126588233
Complex C
U4/U6.U5 tri-SnRNP related factors
126588233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
AAA_22
DEAD
AAA_19
AAA_30
nSTAND3
PWI
Cas3-like_C_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
126588233
NCBI-ProteinID:
XP_050109275
LinkDB
All DBs
Position
2:5356728..5359886
Genome browser
AA seq
1052 aa
AA seq
DB search
MARRSTLKNWVSDMLMEFLGYSNIVVVRFVIQLAKQATSPDGVMDKLVDFGLPSTNETGA
FSKEIFARLRGKALLKKKREVARLVRKLQRTYDEIIDVDNDDYESMKSDSRKKRYRKRVR
SEVEEDREADIARVKEERPVKRRIWIVEGHDGSPFEEEETLRDQREREELERNIREKDAA
APTRLLKQNEAKEAFRRTNADIEALRRVSRQEYLKKREQKKLEEIMEDLEDENCLFRGLK
LTEAEDRDLSYKKQILEIAKKKSVLERDESGNEYMIPEAYDDQECGIDQKKRFSVATQRY
GELNGGDKINPFAEQKAWEDQQIEKATWNFGSKDKNRSMSADEYEFVFGDLIDFVKASAN
EFDDDLQAQQTRSFDSQVKSNLEKLQEERKTLPVFSYRDELLGAVEKYQVLVIVGETGSG
KTTQIPQYLHEAGYTKHGKIGCTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTS
EKTVLKYMTDGMLLREFLGEPDLASYSVLMVDEAHERTLSTDILFGLVKDIARFRPDFKL
LISSATLDAKKFSDYFDYCPILYIPGRRHPVDIFYTKEPQADYLDAAIATALQIHVTEPS
GDIMIFLTGQEEIEAAAEVLKQKTEGLGTKIGELIICLIFANLPTELQAKVFEPTPSGAR
KIVLATNIAETSLTIDGIKYVIDPGYCKMKSYNPRTGMESLQVTPISKASARQRAGRSGR
TSPGKCFRLYTSYSSQHDFEDNTIPEIQRTNLANVVLTLKCLGIHDLLHFDFIDAPPTEG
LIRALELLFALAALNKFGELTKVGRQMAEFPLDPKLSKMIVASGKYKCSDEVISIAAMLS
VGNSVFLRPKNKQTYADNARMWFQTGNVGDHVALLNVYNEWKETNYSTEWCSENYIQARS
MKRARDIREQLERLLGRVEIELISNPDDLTPIKKAIASGFFPHVASSLKNGRYRTIKYPQ
TAYIHPSSGLARESPSCVLYHEMVLTTREYMRCVTEIEAKWLLDVAPHYYQVKHVKNSGS
KSNLAEEGGPNRTDNFLGSKTFHLPTRRLQTY
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggcgtagcactctgaagaattgggtgtctgatatgttaatggagtttctcgga
tattctaacatcgtagttgttcggttcgttattcaactcgctaagcaagcaacatcgccg
gatggtgtgatggacaagctcgtcgattttggactgccatccacgaatgaaacgggcgct
ttttcgaaagaaatcttcgctagattgcgcggcaaggcattattgaaaaagaagagggaa
gttgccaggctggtgaggaagctgcagagaacatatgatgagatcatagatgtggacaac
gatgattatgagtccatgaagtcggattcgaggaagaaacggtataggaagagggtgcgg
agtgaagtagaagaagatcgcgaggcagatattgcgagagtgaaagaagagagaccggtt
aaaagacgaatatggatagtagaaggccacgatggttcgccgtttgaagaagaagaaaca
ttgcgtgatcagcgagagagggaggagttggagagaaacataagggagaaggatgcagca
gccccaacaaggttgttaaaacagaacgaggcaaaggaggcgtttcggagaaccaatgct
gatatcgaagctttaagaagagtttcaagacaagagtatctaaagaaacgggagcaaaag
aaattggaggaaattatggaagatttagaagatgagaattgcttattcagaggtctgaag
ctgaccgaagctgaagaccgtgacttgagttacaagaaacaaatattagagattgcgaag
aaaaagtcagtgctagaaagggatgagagtggcaatgagtacatgatcccggaagcctat
gatgatcaggagtgcggcattgatcagaaaaagagattttctgtggctactcaacgctac
ggggaactgaatggcggagataaaatcaacccgtttgcagaacagaaagcttgggaggat
cagcaaattgaaaaggcaacatggaatttcggatccaaagacaaaaataggtcaatgtct
gctgatgagtacgaatttgtatttggagacctgattgattttgtcaaggcatccgctaat
gaatttgatgatgatttgcaagcacaacaaactcggtcatttgattcgcaagtgaaatca
aacttggagaagctgcaggaagagagaaaaacattaccagtcttctcctatcgtgatgag
ttgctcggagcagttgaaaaatatcaggttcttgttatcgttggtgaaactgggtccggg
aaaaccacacagataccccaatatctgcatgaggcaggatacacgaagcatggaaagatt
ggatgcacgcagccacggcgagttgctgctatgagtgttgctgccagggtttctcaagaa
atgggagtcaaactcggccatgaggtaggatattctattcgttttgaagattgcacatct
gaaaaaactgttctgaaatatatgactgatggaatgttgttgcgtgaatttctcggcgaa
ccagatttggcaagctatagtgtgctgatggtggacgaggcacatgaaagaacgctctca
acagatattctgttcggattagttaaagacattgcacgatttagacctgattttaaactc
ctcatctcaagtgcaactcttgatgctaagaagttcagcgattactttgattattgcccg
attttatatattccaggaaggcggcatcctgtcgatatattctacacaaaggaaccacaa
gctgattatttagatgcagcaattgctactgcacttcaaatccatgtgacagaaccatct
ggcgatataatgatctttctcactggtcaggaagaaattgaagcagcggccgaagtgttg
aaacagaagacagaaggccttgggacaaaaattggtgagctgattatctgtctcatattt
gcaaacctacctactgagttgcaagcgaaggttttcgagcccacgccttcaggggctagg
aagattgtcctggccacaaacatagcagaaacttcgctgacaatagacgggatcaaatat
gtcattgaccctggatattgcaagatgaagagttataatccgaggactgggatggagtca
ttgcaagtcactcccatctcgaaagcatcggcaagacaaagggcaggtcgatctggtcga
acaagccctgggaaatgcttcaggttatacacatcttacagttcccagcatgattttgaa
gataacacaataccagaaatacaacggactaaccttgcgaatgtcgtgcttacgctgaag
tgtctcggtatccatgacttgttacatttcgatttcatagatgctccacctactgaagga
ttgataagggcgcttgaactgctgtttgccctagctgcattgaacaaatttggtgagctg
actaaggtcggtaggcagatggcagagtttcctcttgatccgaagctatctaagatgata
gttgcttccggcaagtacaagtgctcggacgaggttatttcaatcgctgctatgctttct
gttggcaactcagtttttctccgcccgaaaaacaaacaaacatacgctgacaatgcacga
atgtggtttcaaaccgggaatgtgggagatcacgttgctttgcttaatgtgtacaatgaa
tggaaggagactaattactcaacagaatggtgttccgaaaactacatacaggcgaggagc
atgaaacgagcaagagatatccgggaacaacttgaacggctcttggggcgggttgagatc
gaattaatctcaaatcccgatgatctaacgcctataaagaaggccattgcatccggtttc
ttcccccacgttgcaagctctttgaagaatggacgttatagaacaatcaaatatccacag
accgcctacatccacccgagctcagggctagcgcgggagtcaccgagctgcgttttatac
cacgaaatggtgcttacaacgagagaatacatgagatgtgtaacggaaatagaggcgaag
tggctgctggatgtcgctccgcattattaccaggtgaagcatgttaagaactcgggttcg
aagagcaacctcgcagaggagggcgggccgaacaggaccgacaactttctgggttcaaag
acttttcatctgccaacccgtaggcttcaaacttactaa
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integrated database retrieval system
