Malus sylvestris (European crab apple): 126588323
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Entry
126588323 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 12-like
KO
K03257
translation initiation factor 4A
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126588323
03012 Translation factors [BR:
msyl03012
]
126588323
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msyl04147
]
126588323
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
126588323
mRNA cycle factors
Stress granule specific factors
126588323
Translation factors [BR:
msyl03012
]
Eukaryotic type
Initiation factors
eIF-4
126588323
Exosome [BR:
msyl04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
126588323
Exosomal proteins of bladder cancer cells
126588323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
WD40
WD40_Prp19
EIF3I
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
ResIII
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_IFT122_1st
Beta-prop_WDR75_1st
AAA_22
CMS1
DUF2780
Beta-prop_Nup120_160
Motif
Other DBs
NCBI-GeneID:
126588323
NCBI-ProteinID:
XP_050109354
LinkDB
All DBs
Position
2:complement(6043403..6052086)
Genome browser
AA seq
888 aa
AA seq
DB search
MCGDATNWDEEAYRESILKEREIQTRTVFRTVWAPSLNPNPDTVVVASSDGSVSSYSIPS
LISKLPLGFSNVKSPNVCRSLMAEPTCFLQAHEGPAYDVKFYGNGEDSVLLSCGDDGRIQ
GWRWKDWEESDVPIHLQGKHVKPIIDLVNPQHKGPWGALSPIPENNALAVYNEGGCIFSA
AGDSCVYCWDVERGQVKMTFKGHSDYLHSVVARNSTNQIITGSEDGTARIWDCKSGKCVQ
VYEPAKGIKLKGFFSCVSCIALDASESWLACGSGQSLSVWNLPASECISRVSTCASVQDV
VFDENQVLAVGAEPLLSRFDINGAILSQMQCAPQSAFSVSLHPSGVTAVGGYGGLVDVIS
QFGSHLCTFGCRCVSPLYSPIPLLLMGTRHVPGWNLDWRDAKTIHKPSLAEFSLINHHPP
NPSLSLSLSPSRNPQLRGLDPRSLGNPYFQKTSTKLSPDALSLSPRLQLSHSSLEVMAAA
PEGSQFDTRQYDTKMSEILATDQQEFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSA
IQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTRELAQQIE
KVMRALGDYLGVRVHACVGGTSVREDQRILSNGVHVVVGTPGRVFDMLRRQSLRPDSIKM
FVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKR
DELTLEGIKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHT
VSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLH
RIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVVEELPSNVADLL
NT seq
2667 nt
NT seq
+upstream
nt +downstream
nt
atgtgcggcgatgcaacgaactgggacgaagaagcatacagagaatccatattaaaggag
cgagagatccaaacccgaacagttttccgaaccgtttgggctccgtcgcttaaccctaac
ccggacaccgtcgtcgtcgcctccagcgacggatcggtttcctcctactccatcccctcc
cttatctccaagctcccactgggtttcagcaatgtgaaatctccaaatgtttgtaggtcg
ttaatggcggaacctacttgcttccttcaagctcatgaaggacctgcttatgatgttaag
ttttacggaaatggcgaagattctgtattgttgagttgcggtgatgatggacggattcaa
ggatggaggtggaaggattgggaggaatcggatgtgcctattcatttgcaaggaaagcat
gtgaaacccataattgaccttgtgaacccccaacataaaggtccatggggggctttatct
ccaatcccagaaaacaatgctcttgctgtttacaacgaggggggatgcattttttctgct
gctggtgattcttgcgtctattgctgggatgtggaaagaggtcaagtcaaaatgactttt
aaggggcattcagattacttgcattctgtagttgctcggaactctaccaatcagatcata
actggttcagaggatgggacagcacggatatgggattgcaaaagtggaaagtgcgttcaa
gtatatgagccagccaagggtattaagttgaaaggatttttttcatgcgtcagttgcatt
gctcttgatgcaagtgaaagctggttggcttgcggtagtggtcagagtttatcagtttgg
aaccttcctgcttctgaatgcatttcaagggtttcaacttgtgcatccgtacaggatgta
gtattcgatgaaaatcaagtattagcagttggagcagaacctctactttcccgttttgac
ataaatggggcgattctttcacaaatgcaatgtgctcctcagtctgccttttccgtctca
ttacacccatctggggttaccgcagtaggaggttacggtggtcttgtggatgttatttcg
cagttcggaagccacttgtgcacattcggctgccgatgcgttagtccgttatattctcct
attccactcctgctaatgggtacccgccacgtacccggatggaatctggactggagggac
gcgaagaccatacacaaaccctcactcgctgagttttcactcatcaatcatcatccgccc
aacccctctctctctctctcgctttctccctcgcgcaatcctcaactccgcggcttagat
ccgaggagtttgggaaacccttatttccagaaaaccagcacaaagctctctcccgacgct
ctctctctctctcctcgccttcaactttctcactcatcactcgaagtcatggcagcagca
cctgaaggatcgcaatttgacactcgtcagtatgataccaaaatgagcgaaatacttgca
actgatcagcaggaattctttacatcgtatgatgaagtttatgatagttttgatgctatg
ggtcttcaagagaatcttctgaggggaatctatgcttacggttttgaaaagccctcggct
attcagcaaagaggaattgttcccttctgcaagggtcttgatgtgattcaacaggctcag
tctggaactggaaagacagcgactttctgttctggtattcttcaacagcttgattatagt
ttgacggaatgccaagccttggttcttgcacccactcgagagcttgctcaacagattgag
aaggttatgagggctcttggagattatctaggtgtgagggtgcatgcttgtgttggtgga
actagtgtccgtgaggaccaacgcattctgtcaaatggagttcatgttgttgttggaact
ccaggtcgtgtttttgacatgcttagaaggcagtcactccgtcctgatagcatcaagatg
tttgttttggatgaggctgatgaaatgctttcccgtggtttcaaggatcagatctacgac
atattccagcttcttccatcaaagattcaggttggtgtgttctctgccacaatgccacct
gaggccctcgagatcacaaggaagttcatgaacaaacccgtgaggattcttgtgaagcgt
gatgaactcaccctggaaggtataaagcaattctatgtcaatgttgacaaggaggaatgg
aagcttgagactctttgcgatctgtatgagaccttggctattacccagagtgtcattttt
gttaatactcgacgcaaggttgactggttgactgacaagatgaggagccgagaccataca
gtttctgccacccatggagacatggaccagaacaccagagacatcatcatgcgagagttt
cgttctggatcatctcgtgtcttgatcaccactgatcttttggctcgtggtattgatgtt
cagcaagtctccctagttattaactatgatctgcccacccagcccgagaactaccttcac
agaattggtcgtagtggacgttttggaaggaagggtgttgccatcaacttcgtaacaaag
gatgatgagaggatgctgtttgacatccagaagttctacaacgtggttgtggaggagctg
ccatcaaacgtcgcggatcttctgtga
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