Malus sylvestris (European crab apple): 126588491
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Entry
126588491 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126588491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126588491
03009 Ribosome biogenesis [BR:
msyl03009
]
126588491
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126588491
Spliceosome [BR:
msyl03041
]
Complex A
U1 snRNP components
U1 related factors
126588491
Complex B
126588491
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
Pre-60S particles
Helicases
126588491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
SQAPI
Motif
Other DBs
NCBI-GeneID:
126588491
NCBI-ProteinID:
XP_050109540
LinkDB
All DBs
Position
11:2309291..2314274
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AA seq
666 aa
AA seq
DB search
MVKRSNDRNEKCSRTRRRLGGLNAVGDDDGDAAQGTSKVRNGRVQLGTKFVTLLRVKESS
RQRKQKQKRREITAQGGTSKTQVEVEREITTSVEVQEYRQQRGITVSSRDVPNPIRTLGR
TPFPEYVKEEFLNAGFIRPTPIQAQAWPIALEGRDIIGIAPPGSGKKLAYLLPAIVHMKS
RPKLSCGDGPIVLILAPTPDRSIQIQQECTKFAAAHIEALCSEQLIGYKNSRVPCGVGIL
IDTPDGVLNALESCRTNLRKVTYLVLDGADWKLTEEDMEFKSQVQEVISQIPPDCQKLFW
GSSWPEEADELARPFLRDACKVDVGSPVLKATHPIDQIVDIVAEDQKYNELVGLLGDIAD
GSRILIFMDIKKGCESCNLLAQKLSDEGYAVSVNENVCQSDRVQIVSGFQGGYIPIMIAT
DAAARDLVLKNVKYVINYDFPGSIDDYVYRIVLAEPKGTAYTFFTTANARCAKELTILLK
EAGQKVGPELAALGRDVRYPESFIPGIPRGAASFLSEKVTGVVYFPIYPHCPEAKTTASF
AVDKVNEKKKLQLHFVRVVEAYECLSGIPVRVTYVTLEAADGTACEMNAYGAIVARWGIT
GKVKTIYFGRVKPSGRMSALFDIRKKLDNRVYKIWPESSRKLREYRSIADNERQRERKGA
LGVATA
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggtgaagcgctccaatgatcgcaatgagaagtgttctcggacaagaagaagactcggt
gggttgaatgctgtcggtgatgatgatggtgatgctgctcaaggcacctcaaaagttagg
aatgggcgagtgcaattgggcaccaaatttgttactcttcttcgagtcaaggagtcatca
aggcagcggaagcagaagcagaagcggagggaaattactgctcaaggcggcacctctaaa
acccaggtcgaggtcgagagggaaattactacctccgtagaggtccaagagtataggcaa
cagaggggaattactgtttcaagccgtgatgttccaaaccccatcaggactttgggtcgc
actccgtttccagaatatgttaaggaagaatttttaaacgctggattcatcaggcctaca
ccaattcaggctcaggcatggccaattgctttggagggccgtgatatcattggtattgct
ccaccaggatccgggaagaagctcgcgtatctgttgcctgcaattgtccatatgaaatcc
cggccaaagctatcttgtggagatggcccaatagtattgattttagctccaacccccgac
cgctctattcaaatccaacaagagtgtactaaatttgctgcagcacacatcgaagcctta
tgcagcgagcaactgattggttataaaaattctcgtgtgccatgtggagttggaatttta
attgacacacctgatggcgtgcttaatgcgttagagtcgtgtcgtacaaacttgcgaaag
gtcacataccttgtgttggatggtgctgattggaagctaacagaagaagacatggagttt
aagtctcaagttcaagaagttatctctcagattccccccgactgtcaaaaattgttctgg
ggtagtagctggccagaggaggctgatgaacttgccaggccattccttcgtgacgcatgc
aaagttgatgtaggttctccagttctgaaagctacacatccaatagaccaaattgttgac
atcgttgctgaagatcagaaatataacgaattggtaggcttgctaggtgacatcgcagat
ggcagcagaatactgatattcatggatataaagaaaggatgtgaatcatgtaacctcctc
gctcagaagctttccgatgaaggttacgcagtctctgttaatgaaaacgtatgtcaatcg
gatagggtccagattgtctctgggtttcaaggtggctatatccccataatgattgcaact
gatgctgctgctcgtgatctagttctgaagaatgtgaaatatgttatcaattacgacttt
ccgggatccattgatgattatgtttaccgcattgtccttgctgagccaaaaggaacagca
tacacgttctttacaactgctaatgctagatgcgcaaaggaacttaccatcttactcaag
gaagctggacagaaggttggtcctgaattggcagcactggggcgtgatgtaagatatcca
gaaagcttcatacctggaatccctcgcggagcagctagctttctgagtgagaaggttaca
ggtgttgtttactttccaatatatccgcattgtcccgaggctaaaactactgccagtttc
gctgtggacaaagtcaatgaaaaaaagaaacttcaactgcattttgtgagagtggtggag
gcatacgaatgcttgtccggcattcctgttagagtaacttatgtaactcttgaggctgct
gatggcacggcttgtgaaatgaatgcttatggagcaatagttgcaaggtgggggattact
ggcaaagtgaaaaccatatattttggcagagttaaacccagtggtcgtatgtcagcacta
ttcgacatcagaaagaaattggataacagagtctataagatctggccagaaagcagcaga
aagttgagggagtaccgtagtatcgctgacaatgagaggcaaagagaaagaaaaggagcc
ctcggcgtcgctactgcttag
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