Malus sylvestris (European crab apple): 126588919 Help Entry 126588919         CDS       T09027                                  Name (RefSeq) DNA ligase 1-like   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism msyl  Malus sylvestris (European crab apple) Pathway msyl03030   DNA replication msyl03410   Base excision repair msyl03420   Nucleotide excision repair msyl03430   Mismatch repair Brite KEGG Orthology (KO) [BR:msyl00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     126588919    03410 Base excision repair     126588919    03420 Nucleotide excision repair     126588919    03430 Mismatch repair     126588919  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:msyl03032]     126588919    03400 DNA repair and recombination proteins [BR:msyl03400]     126588919 Enzymes [BR:msyl01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      126588919     6.5.1.6  DNA ligase (ATP or NAD+)      126588919     6.5.1.7  DNA ligase (ATP, ADP or GTP)      126588919 DNA replication proteins [BR:msyl03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     126588919  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      126588919 DNA repair and recombination proteins [BR:msyl03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      126588919    NER (nucleotide excision repair)     Other NER factors      126588919    MMR (mismatch excision repair)     Other MMR factors      126588919 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  126588919 NCBI-ProteinID:  XP_050110036 LinkDB All DBs Position 11:complement(13362188..13375579) Genome browser AA seq 732 aa AA seqDB search MSSHPSAFDVLMSGARASAAKKKLQPSSLKKRKTLDSTNPIEKPQLLSAHESAGTTQDPE SPSCGSSEVVPAGKKVCVAAGAEERTEELKSRMPLLKKKGREFDPKLVANWGQGERIPFV FVCLVFDLIDKETGRIVITDIVCNMLRTVMYTTPEDLVPMIYLAANRIAPAHEGLELGIG DGSIIKALAEACGRTEAHVKKQYKERGDLGRVANGNRSSQSTMHKPDALTVTKVFSTFRQ LAKESGKDSQERKKNHIKALLVAATDREPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYT EKNSTPPPHIQSPLEEAAKIVKQVYSLLPDYDKIVPALLSGDVWNLPEICNFTLGVPVGP MLAKPTKGVSEIVQKFQDTEYTCEYKYDGERAQIHFMENGSVEIYSRNAERNTGKYPDVV VAVSRLKKSSVTSFVLDCEIVAYDREKQKILPFQVLSTRPRKNVSVSDIKVEVCIFSFDM LYLNGRPLIQEQLKVRRECLYDSFVEEAGFFQFATALTSNDIDEIQKFLDAAVSSSSEGL IIKTLNKDATYEPSKRSLNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLAC YDSNNEEFQSICKVGTGLTEAMLEERSASLLTKMIPKPKPYYRYSDSLNPDVWFDPSEVW EVKAADLTISPVHRAAVGIVDANKGISLRFPRLIRVREDKPPEQATSSEQVAELYNAQAI NHSNNQNDNRDD NT seq 2199 nt NT seq  +upstreamnt  +downstreamnt atgtcctcccacccctccgccttcgacgtactcatgtccggcgcccgcgcctccgccgcc aagaaaaagctccagccttcttccctcaagaagcgaaaaaccctagactccactaatcct atcgaaaaaccccaattgctatctgcgcacgaaagtgccggcacaacccaagacccagaa tctccgagctgtggcagcagcgaggtagttccggcagggaagaaagtgtgtgtggcggcg ggtgccgaggagcggacggaggaattgaaaagccgaatgccgctattgaagaagaaaggc agggaatttgaccctaaattggtggcgaattggggccagggcgagaggattccttttgtg tttgtttgtttggttttcgatttgattgacaaagagacaggtcggattgtgatcacggat attgtttgtaacatgttgagaactgtaatgtacaccacgcctgaggatttggtgcctatg atctatcttgcggccaataggattgcgccagcgcatgagggtttggagcttggaattggc gacggttcgattattaaggcgcttgcagaggcctgtgggaggactgaagcgcatgtgaag aagcaatacaaggaaaggggagatctgggtcgtgttgcaaatggaaaccgttcttctcaa tctacgatgcacaagcctgatgcattaacagtcaccaaggttttcagtacatttcgtcaa cttgctaaggaatctgggaaggatagtcaggagaggaaaaaaaaccatatcaaggcactt cttgttgctgctactgaccgtgaacccttatatctgatccgtttgcttcagacaaagttg cgaattggattggcagagcagactcttttagctgcattgggacaagctgcagtgtatact gaaaaaaattctacaccacctcctcatattcagagtcctctagaagaggctgcaaaaata gttaagcaagtgtactctctgcttcctgattacgataaaatcgtccctgcccttttaagt ggtgacgtgtggaatcttccagagatatgcaactttactttgggtgtcccagttggacct atgctagcaaaaccaactaaaggggtatctgagattgtacagaagtttcaggatacagaa tacacatgtgaatacaagtatgatggagaacgtgcccagatacatttcatggaaaatggt tcggttgagatatacagtcgaaatgctgaaagaaacactggaaagtaccctgatgttgtt gttgcagtgtcgaggttaaagaagtcatctgtaacatcatttgttttggattgcgaaatt gttgcttacgaccgtgaaaaacagaaaattctgcccttccaggtactcagcactagacct cgtaaaaatgtgagcgtgagtgatatcaaggttgaagtctgcatattttcttttgatatg ttgtatcttaatggccgaccacttattcaggaacaactgaaagttcgtagagagtgtctg tatgactcttttgtggaagaagctggattttttcagtttgccacagccttaacatcaaat gatatagatgaaatacaaaagtttcttgatgctgctgtcagttcaagttccgagggttta attattaaaacattgaacaaagatgctacctacgagccttcaaagcggtcacttaactgg ctgaaattgaagaaagattacatggacagtattggggactcactagacttggtacctatt gctgctttccatggccggggaaaacgtacaggtgtctatggtgcattcctcctcgcttgt tatgatagcaataatgaagagtttcaaagcatttgtaaagtaggcaccggactcaccgaa gcaatgcttgaagaacgctctgccagtctccttacgaaaatgatacccaaacctaagcca tattataggtattctgattcattgaatccagatgtatggtttgatccctcagaggtttgg gaggtgaaagctgcggacctgactattagccccgttcatcgtgctgcagttggcatagtg gatgctaataagggtatctctctccgctttccacgtctaattcgtgttcgggaagataaa cctccagagcaagccacatcgtctgaacaggtagccgagttgtataatgctcaagccatc aaccattcaaacaaccaaaatgacaacagagatgattag

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