Malus sylvestris (European crab apple): 126589340
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Entry
126589340 CDS
T09027
Name
(RefSeq) DNA mismatch repair protein PMS1 isoform X1
KO
K10858
DNA mismatch repair protein PMS2
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03430
Mismatch repair
msyl03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
126589340
03460 Fanconi anemia pathway
126589340
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
msyl03400
]
126589340
DNA repair and recombination proteins [BR:
msyl03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
126589340
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
126589340
NCBI-ProteinID:
XP_050110561
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All DBs
Position
11:40293722..40299055
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AA seq
985 aa
AA seq
DB search
MEAAAAPSDSPTIKPINKGVVHRICAGQVILDLSAAVKELVENSLDAGATSIEIGLKDYG
KEWFQVVDNGCGISPNNFRVLALKHHTSKLAGFPDLQSLTTFGFRGEALSSLCALGDLTV
ETRTKNETVATHLTFDHSGLLVAEKKTARQAGTTVTVKNLFSNLPVRCKEFSRNIRKEYG
KLVSLLNAYALIAKGVRLVCTNATGKNAKSVVLKTQGSGSLKDNIVTLFGLTTFNCLEPV
SISVSESCKVDGFLSKSGQGSGRNMGDRQYFFVNGRPVDMPKVTKLVNELYRRANSQQHP
IAIMNFTVPTRACDVNVTPDKRKVFFSDESAILVALREGLQEIYSSSNAHYTVNKIEDPA
KEADRSELCSPHQRSHKFLKQSPTEDVVSEEVSIATTGGLQQTYSPSDAPCSINKVEEVP
TKEAGSSESCFRRQLSRMFPKQSSPDGSVPEEIHVKDHLAEGNARLKALETESEYTDDVE
ELSLENAMSKDFTLRVHSSKKVGGSSSKLTTHNNSMTTDQTRSLSRVVENAANGDSCSRS
ISVQSSLNQFVTVSKRKHENISTVLSEMPVLRNQALHSQSKESTSDLHATVSNSPVRHDQ
ANASSEIDNSAEVDENEPSKYLRADKILNKIRGPISVGGNTKDLNPSEDVQPQHIADPPP
IMASPASPSGGLNCLSEDLPVAAPSPSCILLDTPKTSSSVMMCSTLQFSFQDLKTRRLRM
LSRSKSSLPGGAKAQRCFAAATLELSQSENEERKARALAAATTELERLFRKQDFGRMKVI
GQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLSQSTILNQQPLLRPLRLELSPQEEVVA
SMHIDIIRKNGFSLEEDPQAPPGQHFNLKAVPFSKNITFGVEDVKDLISTLADSHGECSV
MGSYKTDTVDSVCPSRVRAMLASRACRSSVMIGDALGRNEMQKILEHLAGLKSPWNCPHG
RPTMRHLVDLKTIRRRSEEGDDEDS
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atggaagcagcagcagctccgtccgattcccccacaataaagccgataaacaagggcgtg
gtgcacaggatctgcgccggccaagtgattctcgacctctccgccgccgtgaaagaattg
gtggaaaacagcctcgacgccggcgccaccagcatcgaaatcggcctcaaagactacggc
aaagagtggttccaggtcgtcgacaatggctgcggcatttcgccgaacaacttccgggtc
cttgccctcaagcatcacacctcgaagctcgccgggttcccggacctccagtccctcacc
accttcggcttccgcggcgaggccttgagctctctctgtgctttgggggatttgactgtg
gaaaccaggaccaagaacgagaccgtcgccacgcacttgacattcgaccattcgggtttg
ttggtcgccgagaagaagaccgcccggcaagcgggcactaccgtcacggtgaagaacttg
ttttcgaatttaccagtgcggtgcaaggaattcagccgcaacattcggaaggagtatgga
aagcttgtttctttattgaatgcctatgctcttattgctaaaggcgttcggttagtctgc
acgaatgctactggtaaaaatgcgaaatctgtggtacttaaaacacaagggagtggttcc
cttaaagataacattgtcacactgtttggattgaccacgttcaattgcttagaaccagtg
agtatatctgtgtctgaaagttgcaaggttgatggttttctgtccaagtctggacagggt
agtgggcgaaatatgggagatagacagtacttttttgtgaatggtagaccggtggatatg
cctaaagttaccaagcttgtgaatgagttgtatagaagagcaaattcccagcagcacccc
attgcaataatgaattttacggttccaacaagagcgtgtgatgtcaatgtaactcctgat
aaaaggaaagtgttcttttctgatgaaagtgccatactggttgcccttagggagggttta
caggagatatattcttcaagtaatgctcattacactgtaaataaaattgaggaccctgct
aaggaagcagataggtcagagttgtgttctcctcatcaaaggtctcataagtttctgaaa
caatcgcctacagaggatgttgtttctgaagaagtaagcattgccactacaggcggtttg
cagcaaacatattctccaagtgatgctccttgttctattaataaagttgaggaggtgcct
actaaggaagcaggtagctctgagtcgtgttttcgtcgtcaactgtctcgtatgttcccg
aagcaatcatctccggatggcagtgttcccgaagaaattcatgttaaggatcaccttgca
gaaggcaatgctcgtctgaaagctcttgaaactgagtctgagtacaccgatgatgtagaa
gagttgagcctagaaaatgcgatgagcaaggactttactcttagagtacacagcagtaag
aaggttggtggtagtagtagcaaattaacaacacataacaacagtatgacaactgatcaa
actcgttctctttcaagagtggttgagaatgctgccaatggagattcatgtagtcgttca
atctctgttcaatcatcactcaatcaatttgtgaccgtaagtaaaagaaaacatgaaaat
atcagtacagtgctatctgaaatgcctgtcctaaggaaccaagctcttcattctcaatcc
aaggaaagcacttctgatttgcatgctactgtttcaaactctccggttcgacatgaccag
gccaatgcttcttctgagattgataactctgctgaagttgatgagaatgagccatccaag
tatcttagagcagacaagattctcaataaaattagaggtccaatttctgttgggggcaac
actaaagatctcaatcctagtgaggatgtacagcctcaacatatagcagatcctcctcct
attatggcatcacctgcttcacctagcggaggtctaaattgtttgtctgaagatcttcct
gttgcagctccatcaccttcttgtatactattagatactccaaagacttcttctagtgtt
atgatgtgttccaccttgcaatttagctttcaagacctaaaaacaaggaggctgcggatg
ttgtctagatcgaaatcaagcttacctggaggagcaaaagcacaaaggtgctttgctgct
gcgacgctggagctttctcaatcagaaaacgaggagcggaaagcgagggctttagctgca
gctactactgagttggaaagactttttagaaagcaagattttggcagaatgaaggtaatt
gggcaattcaatcttggcttcatcattgggaagttagatcaagatctgtttattgtggat
caacatgcagctgatgagaagtacaattttgagcgtctatcacaatctactatcttaaac
caacagcctcttcttcggccattgaggttagagttatctcctcaggaagaagttgttgct
tcaatgcacatagacataatcaggaaaaatggattctctttggaagaggatccacaggct
ccgcctgggcaacattttaacttgaaagctgtccccttcagtaaaaacataactttcgga
gttgaagatgtcaaggacctgatttccactcttgctgatagtcacggggaatgctcagtc
atggggagttataagacggacaccgttgattctgtttgcccatcaagagttcgtgcaatg
ctagcatcacgcgcatgcagatcatctgttatgattggggacgcccttggaagaaatgag
atgcagaagattcttgagcatttggcgggtctgaagtctccttggaattgcccgcatggc
aggccgactatgcgccatttggtcgacttgaaaaccatacgcagaaggtccgaagaaggc
gatgatgaagactcttga
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