Malus sylvestris (European crab apple): 126589624
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Entry
126589624 CDS
T09027
Name
(RefSeq) ruBisCO large subunit-binding protein subunit alpha
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126589624
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126589624
03110 Chaperones and folding catalysts [BR:
msyl03110
]
126589624
03029 Mitochondrial biogenesis [BR:
msyl03029
]
126589624
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msyl04147
]
126589624
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
126589624
Messenger RNA biogenesis [BR:
msyl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
126589624
Chaperones and folding catalysts [BR:
msyl03110
]
Heat shock proteins
HSP60 / Chaperonin
126589624
Mitochondrial biogenesis [BR:
msyl03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
126589624
Exosome [BR:
msyl04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
126589624
Exosomal proteins of other body fluids (saliva and urine)
126589624
Exosomal proteins of breast cancer cells
126589624
Exosomal proteins of colorectal cancer cells
126589624
Exosomal proteins of bladder cancer cells
126589624
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
gpW
Motif
Other DBs
NCBI-GeneID:
126589624
NCBI-ProteinID:
XP_050110938
LinkDB
All DBs
Position
11:12692138..12695691
Genome browser
AA seq
585 aa
AA seq
DB search
MASANALTSASVLCSPKQSLRRGVNQQQNNRVNYRQSRGRFVVKSSAKEIAFDQHSRRAL
QAGIDKLADAVGLTLGPRGRNVVLDEYGSPKVVNDGVTIARAIELPDAMENAGAALIREV
ASKTNDSAGDGTTTASILAREIIKLGLLSVTSGANPVSIKKGIEKTVQGLVEELENKSRP
VKGRDDVKAVATISAGNDEQIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDR
GYISPQFVTNAEKLVVEFENARVLVTDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVSGE
ALATLVVNKLRGILNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLSLLVENTSVEQL
GLARKVTISKDSTTIIADAASKDELQARIAQLKKELSETDSVYDSEKLAERIAKLSGGVA
VIKVGAATETELEDRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSAYVPAIKEKLIDAD
ERLGADIVQKALVAPAALIAQNAGIEGEVVVEKIRDSEWEVGYNAMTDKYENLVDAGVID
PAKVTRCALQNAASVAGMVLTTQAIVVEKAKPKSAAAAAPQGMTV
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcggccaacgctcttacttctgcttccgtcctctgctctcccaaacagagtttg
agaaggggggtgaatcagcagcaaaacaatagggtgaattacaggcaatcaaggggtcgc
tttgttgtgaagtcctctgcaaaagaaattgcttttgaccagcattcaaggcgtgcgcta
caggctggaattgataagcttgcggacgctgttggccttactcttggtccaagggggagg
aatgttgtattggatgagtatggtagtcctaaagttgtcaatgatggagtcactattgct
agagctattgagttacctgatgcgatggaaaatgctggtgcagccctaattagagaggtt
gctagcaagaccaatgactctgctggtgatggaacaacaactgcatcaattcttgcacgg
gagataatcaagctagggctcttgagtgtgacctctggtgcaaatcctgtttcgataaag
aagggtattgagaaaacggtacaagggctggtggaggagctagagaataagtctaggcct
gttaagggtcgtgatgacgttaaagctgtcgcaactatttctgctggaaacgatgagcaa
attgggacaatgattgctgatgctattgacaaggttggacctgatggtgtcctgtcgatt
gagtcatcctcctcatttgagactactgtcgaggtagaagaaggaatggagattgacaga
ggatatatctcccctcaatttgttacaaacgctgagaaattggttgttgaattcgagaat
gcaagagttttggttactgaccagaagatttcagctatcaaggacataattccattgttg
gagaagaccactcagttgagagcccctctgcttataattgctgaggatgtctctggggag
gctttggcgactcttgttgtgaacaagttgaggggtatactgaatgttgccgctatcaaa
gctcctggttttggtgaacggagaaaggctctcctccaagatattgccattttgacaggg
gctgagtttcaagccagtgacctgagtctactggttgagaacacctcagttgagcagctt
ggtttggcccgaaaggtgacaatctcaaaggactccactaccattattgctgatgcagca
tcaaaagatgagttgcaagccagaattgcacagctgaagaaagagctgtctgagacagat
tctgtttatgactcagaaaaactggctgagaggattgccaaattatcaggtggagttgct
gttataaaggttggtgctgctacagaaactgaacttgaggaccgtaagcttcgtattgag
gatgccaagaatgctacttttgctgccatagaagaagggattgtgcctggtggtggtgct
gctttggtgcatctctcagcatatgtccctgccatcaaggaaaaacttatcgatgcagat
gagcggctaggtgctgacattgtccagaaggcactggtagcaccagcagcattgatagct
caaaacgcaggaattgaaggcgaagtggtggtggagaaaataagggatagtgaatgggag
gttggttacaatgcaatgacagacaagtacgagaacttggtggatgccggtgttatcgac
ccagcaaaggtaacaagatgtgctttgcagaacgcagcttcggttgccggaatggtcttg
accactcaggccattgtggtggaaaaggctaagcccaagtcggccgcagcagctgcccca
caaggcatgactgtgtaa
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