Malus sylvestris (European crab apple): 126589728
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Entry
126589728 CDS
T09027
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
126589728
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
msyl04131
]
126589728
Membrane trafficking [BR:
msyl04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
126589728
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
zf_RING_Vps8
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_HPS5
WDR55
WD40_Prp19
Beta-prop_EML_2
zf_RING_Vps8_fungal
zf-RING_2
WDR90_beta-prop_4th
ANAPC4_WD40
EIF3I
PEP5_VPS11_N
zf-HC5HC2H
CAC1F_C
Motif
Other DBs
NCBI-GeneID:
126589728
NCBI-ProteinID:
XP_050111067
LinkDB
All DBs
Position
11:13852899..13869569
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AA seq
963 aa
AA seq
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MAPIPPDNGVEGDDEIEEEGEEEEEEEEEEEEEEEEEEEEEPRLKYQRMGGSIPTLLTSD
VASCIAVAERMIALGTHGGTVHILDFLGNQVKEFPAHTAAVNDLSFDIEGEFIGSCSDDG
SVVISSLFTDEKMRFEYHRPMKAIALDPDYVKKSSRRFVAGGLAGHLYFNTKRWLGFKDQ
VLHSGEGPIHAVKWRTSLIAWANDAGVKVYNTANDQRITFIERPRGSPRPELLLPHLFWQ
DDSLLVIGWGTSIKITSIKTNQSRATNGTYNHVPLSGMNQVDIVASFQTSYFISGIAPFG
DTLVVLAYIPVEEDGEKEFSSSAPSRQQGNAQRPEVRIVTWNNDELSTDALPVHGFEHYK
ANDYSLAHAPFSGSSYAGGQWAEGDEPLYYIVSPKDVVIAKPRDAEDHIAWLLQHGWHEK
ALAAVEAGQGRSELLDEVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHL
RQLPVLVPYIPTENPRLRDTAYEVALVALATNPSFHKELVSTVKSWPPVIYSSLPVISAI
EPQLNTSSMTDALKEALAVLYEIDGQYEKAFALYADLLKPDIFSFIEKHNLYDSIREKVV
QLMMLDCKLAVPLLIQNKDLITPSEVVNQLLNASDKCDSRYFLHAYLHSLFEADPHSGKE
FHDMQVELYAEYDPKMLLPFLRSSQHYTLEKAYEICVGRDLLKEKVFILGRMGNTKQALA
VIINKLGDIEEAVEFVNMQHDDELWEELIQQCLHKPEMVGVLLEHTVGNLDPLYIVNMVP
NGLEIPRLRDRLVKIITNYRTETSLRNGCNDILKADIVNLLVKYYKEATHGIYLSNEEDE
ARSKRNDSRASQVIEKSVGVRSMEVKSKPRGGARCCMCFDPFSIQNVNVIVFFCCHAYHV
TCLMDSTYTSEMKASVANPNERVDDYGYGDSDGDDDGDDDDDTQSGGSRMRCILCTTAAS
GVK
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atggccccgattccgcccgataacggcgtcgaaggcgacgacgagatagaggaagagggc
gaggaggaagaagaagaggaagaggaggaagaagaagaagaagaagaagaagaggaagag
gagccgaggctcaagtaccagcgaatgggaggcagcattcccacactgttaacgagcgat
gtggcgtcgtgcatagccgtcgcagaacgaatgatcgcgctcgggactcacggcggcacc
gttcatattctcgattttctcgggaatcaggttaaggaattccctgctcatactgctgca
gtgaatgatcttagcttcgacatagaaggtgaatttataggaagctgttcagatgatggg
tctgttgtaataagcagtcttttcactgatgagaaaatgaggtttgagtatcatcgccca
atgaaggctattgccctggatccagattatgtaaaaaaatcatctagaagatttgtagct
ggtggtttagctggtcatttatattttaatacaaaaagatggctgggctttaaagatcag
gttttgcactctggtgaaggtcctatacatgcagtgaagtggagaacgagtctcattgct
tgggctaatgatgcaggtgtgaaagtgtacaatactgcaaatgatcaacgtataacattc
attgaaaggccacgaggaagcccacgtcctgagcttttgcttcctcacttattttggcag
gatgactcattgttggtcattggctggggaacatcaatcaaaatcacatcgataaaaaca
aatcagtctagagccaccaatgggacatataaccatgtcccattgtctggtatgaaccaa
gtggatattgtggcgtcctttcagaccagctatttcatttctgggattgccccttttggt
gatactttggtcgttctagcctatatccctgttgaagaagatggggagaaggaatttagt
agctctgctccatcacgacagcagggaaatgcacagagaccagaagtacgtattgtaaca
tggaataatgatgaactttcaacagatgccttacctgtacatggctttgagcattacaag
gcaaatgactattcccttgcacatgctcctttctcaggtagcagctatgctggtggccag
tgggccgaaggtgatgaacctctgtactatattgtttccccaaaggatgtagtcattgca
aaaccgagagatgcggaagatcatattgcttggcttcttcaacatggttggcatgaaaaa
gctttggctgcagttgaagcgggccagggacggagtgaacttcttgatgaggttggttct
agataccttgatcatttgattgtggaaagaaaatatgctgaagccgcatctttatgccct
aaattgttgcgaggatctgcttcagcatgggaaagatgggttttccactttgctcatttg
cgtcagcttcccgtgttagtcccatatattccaacagaaaacccaagactgcgtgatact
gcttatgaggttgctcttgtagctctcgctacaaatccgtcttttcataaggagcttgtg
tcaactgttaaatcttggccacccgtgatctactcttcactgcctgttatctcagctata
gaacctcagcttaatacatcgtccatgacagatgcccttaaggaggcactagcagtgttg
tatgagattgatgggcaatatgagaaagcattcgcactatatgctgatcttttgaagcca
gacatattttccttcattgaaaagcacaatctgtatgattcgattcgggaaaaggttgtc
caattaatgatgctagattgcaagcttgcagttcctttgttgatccaaaacaaggattta
ataactccatctgaagttgtcaaccaacttctgaatgcaagtgataagtgtgattccaga
tatttcttgcatgcatacttgcattcactatttgaagcagaccctcattctggaaaagaa
tttcacgatatgcaggtagagctttatgcagaatatgatccaaagatgctacttcctttt
cttcgcagtagtcaacattataccctggagaaggcatatgaaatttgtgtcggaagagat
cttttaaaggagaaagtcttcattcttggaagaatgggaaatactaaacaagcccttgct
gtaatcataaataaacttggggatattgaagaggctgtagaatttgtaaatatgcaacat
gatgatgaactctgggaagagttaatccagcagtgtcttcataaacctgaaatggtaggt
gtgttgttggagcacacagttggaaacctagatcctctttatattgtgaatatggttccc
aacggattggagattcctaggcttagggatcggctagtcaaaatcatcaccaattacagg
accgaaacatctctaagaaatgggtgcaatgatattcttaaggctgatatcgtcaacctc
ttggtcaaatactacaaagaggcaacacatggaatttacttgagcaatgaagaagatgag
gcacggtcaaagagaaatgatagtagggcttctcaggtgattgagaaatcggtaggtgtg
agaagtatggaggttaaatcaaaacctaggggcggtgcaaggtgttgcatgtgtttcgat
cctttttctattcaaaatgttaatgtcattgttttcttttgctgtcatgcttatcatgtg
acttgtcttatggattccacctatacgagtgaaatgaaagccagtgtggccaatcctaat
gagagagtagacgattatgggtatggtgatagtgatggtgacgatgatggcgatgatgat
gatgacacccaatcgggtggctctcgcatgcgttgtatcttatgtactactgctgctagt
ggggtgaagtga
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