Malus sylvestris (European crab apple): 126589818
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Entry
126589818 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 28-like
KO
K13181
ATP-dependent RNA helicase DDX27 [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126589818
03009 Ribosome biogenesis [BR:
msyl03009
]
126589818
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126589818
Spliceosome [BR:
msyl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
126589818
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
Pre-60S particles
Helicases
126589818
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
126589818
NCBI-ProteinID:
XP_050114080
LinkDB
All DBs
Position
1:14277203..14284638
Genome browser
AA seq
768 aa
AA seq
DB search
MTPSFVFEPPSDEEYSDEEQGLGDGNFQSSWDFASYSEIVSQEHAHGSTTSVNFKIKKAL
QQQPISHHKTADEDNESNKQEDCNQPDSSDEEDQEEAFNDDDALGDGNTNSKPLIRICEK
LDHAKPTPIQTEDKDNKEGDDAPPNAADDNNKPFFAPSEGVSFHANSFMELNLSRPLLRA
LEKLGHTKPTPIQAACIPVALAGRDICGSAITGSGKTGAFALPTLERLLYRPKRLPAIRV
LVLTPTRELGVQVLSMIEKLAQFMDIRCCQAIGGLPMKEQEIALRSKPDIVVATPGRIID
HLHNSMSVDLEDLAVLILDEADRLLEIGFSAEIRELIRLCPKRRQTMLFSATMTTEVDEL
VKLSLTKPLRLSADPSAKRPVALTEEVVRIRRMREVNKEAVLLALCSKTFTSRVIIFSGT
KVAAHRLMILFGLAGLKAAEFHANLSQPQRLHALELFRKKEVDFLISTELIARGIDIDGV
QTVINYDCPTNLSSYVHRVGRTARAGRDGYAVTFVTDNDRSLLKSIEKRVGSKLKSPIVA
EQSITKWSRVIEEMEDQVAAIVLEEREEQALRDAEREVTKAENMILHKDEIFSRPKKSWF
QSENDKKKVVHAAKASLGREKRCGNDVISAQQAEDIKMKEKRKREREKNLPRKIRRKLEA
AREMLEDENQLKGSEKFKEKTGMPLVDLAYRRAKAMKAAQKTTDAGKTLKKSSKRCNLPP
QRTQSRTDEMRDLFHSDITERKHSRKLGGAGMKKSKSSFKSNSRCKRR
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgactccgagtttcgtatttgaacccccaagcgatgaagaatattccgatgaagagcaa
ggtcttggcgatggcaattttcaatcctcatgggacttcgcatcttactctgaaatagtc
tcccaagaacatgcccatggaagcaccacctctgtcaatttcaaaattaagaaagctttg
cagcagcaaccaatctcacaccataaaactgctgacgaagacaacgaatccaacaaacaa
gaagattgtaatcagccagattccagtgatgaagaagaccaggaggaagcttttaatgat
gacgatgctctaggagatggcaatactaatagtaagccattgattcggatttgcgagaag
ttggaccatgcgaagcccactccaattcagactgaagacaaagacaataaggaaggcgat
gatgctcctcctaatgctgccgatgacaataataaacccttttttgccccatcagaggga
gtttcgtttcatgcaaattcatttatggagttgaacttgtctcgccctttgcttcgcgct
ttagagaaattgggccataccaaacccactccaattcaggcagcatgcataccagtggcc
cttgctggtcgtgacatatgtgggagtgccattactggttccgggaagacgggtgctttt
gcgttaccaactttggagagactgttgtatcgccccaagcggctgccagctataagggtc
cttgttttgactccgacaagggaactcggggttcaggttctgagtatgattgaaaaactt
gctcagttcatggatatcagatgttgccaggctattggagggcttccaatgaaggaacaa
gagatagccttgagatcaaagccagatattgttgtagctactccaggacgcattatagat
catttacacaattctatgtctgtggatttggaagatcttgctgttctaattcttgacgag
gctgatcgacttttagagattgggtttagtgctgaaattcgcgagctgattcgtctatgc
cccaaaaggagacagaccatgcttttttcagctacgatgactactgaagttgatgaactt
gtcaagctttctcttaccaaaccactacgtctctcagccgacccatcagctaaacggcca
gtggcactaacggaggaggtggtcaggatacgacgaatgcgtgaagtaaataaggaagca
gttctacttgcactgtgttcgaagacattcacttctagagtgatcattttcagtggcaca
aaagtagctgcgcataggttgatgatattatttgggttagctggcttaaaagctgctgag
tttcatgcaaacctttctcaaccccagcgcctacatgctttggaactctttcggaagaag
gaagttgattttttgatttcaactgaattgattgcccgtggcattgacatagatggtgtt
cagactgttatcaactatgactgtcctacaaatctttcaagctatgttcatcgagtcgga
cgtacagcaagggctggcagagatggatatgctgtaacttttgtgacagataatgatcgg
tctcttttaaaatccattgaaaaaagggttggttcaaaactgaagagtccaattgttgct
gaacaatcaattaccaagtggtcccgggttattgaggaaatggaagatcaagtggctgca
attgttctagaggaaagggaagaacaagcactaagagatgctgaaagggaagtaacaaag
gcagagaatatgatattacacaaagatgaaattttttcacgcccgaagaagtcctggttt
cagtcagaaaatgataagaagaaggtagtgcacgcagcgaaggcatcccttggaagagaa
aagcgttgtggaaatgatgtaatcagtgctcagcaagccgaagacataaaaatgaaagaa
aagaggaagcgggagcgtgagaaaaatttgcctcgcaagatacgccggaaattggaagca
gctagagaaatgttagaggatgaaaatcagctcaaaggcagtgagaagtttaaagagaag
acaggaatgccacttgttgaccttgcttacagacgggcaaaagccatgaaggctgcacaa
aaaacaacagatgctggcaagactttgaagaagtctagcaagagatgtaatcttcctcca
caaagaactcagtctaggacagatgaaatgcgggacctgttccacagtgacataactgaa
aggaagcatagcagaaagcttggtggagcgggaatgaaaaagtccaagagttccttcaag
agcaattcaaggtgcaaacgaagatga
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