Malus sylvestris (European crab apple): 126589866
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Entry
126589866 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126589866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
msyl03041
]
126589866
03009 Ribosome biogenesis [BR:
msyl03009
]
126589866
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126589866
Spliceosome [BR:
msyl03041
]
Complex A
U1 snRNP components
U1 related factors
126589866
Complex B
126589866
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
Pre-60S particles
Helicases
126589866
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF3439
AAA_22
Dicty_REP
Motif
Other DBs
NCBI-GeneID:
126589866
NCBI-ProteinID:
XP_050111259
LinkDB
All DBs
Position
11:complement(4351356..4357679)
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AA seq
573 aa
AA seq
DB search
MSYVPPHLRSSSRTTTTTTTTTTTTAKPSSRTLDDQSKLSSSNSHINNDKSSGGASFSSF
SHSNASSRGSSGAVSQASRARPDSVVPQWKPSDRVLGMKPEMIEEVCLRLNLDVSASPDS
APAPAPIESFTDMCLHPSIMKDIDNHGYTTPTSIQAQAMPVALSGRDLLGCAETGSGKTA
AFAIPMIQHCLAQPPVQRGDGPLALVLAPTRELAQQIEKEVKAFSASLESFRTAIVVGGT
NISEQRSELRAGVDVVVATPGRFIDHLQQRNTSLTRISFVVLDEADRMLDMGFEPQIREV
MRNLSEKHQTLLFSATMPEEIEELAQEYLTKPVQVKVGKVSSPTANVTQTLEKVPESEKT
DRLLALLVEEASRVEGTGHPFPLTIVFVERKTRCDEVAEALVAQGLHAVALHGGRTQTER
EAALRDFRKGTTSILVATDVASRGLDVSGVAHVINLDLPKSMEDYVHRIGRTGRAGSMGQ
STSFYTDRDMFLVANIKKAISDAGSGNAVAFATGKTARRKEKEAAAAQKQARVALSNSST
AGPASVNIEDKYRFMFADSNNKKEGAADSAWDD
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacgtgcctccgcacctgaggtcgagctcacgaaccaccacaaccaccaccacc
accaccaccaccaccgccaaaccctcgtcccgaaccctagacgatcagagcaagctctcc
tcctcaaactctcacatcaacaacgataagtcgtccggtggtgcttccttctccagcttc
tcgcactccaatgcctcctcccgcgggagctccggcgctgtctcccaggccagcagagct
cgccctgactccgtcgtccctcagtggaagccctccgaccgcgtcctcggcatgaagcct
gaaatgattgaagaggtttgtttgcggcttaatttggatgtttctgctagtcccgactct
gctcctgctccggcaccgattgagtctttcacagatatgtgtttgcaccctagcatcatg
aaggatatcgacaatcacggatacactacaccgacatccattcaggctcaagctatgccg
gttgccctcagtgggagggacctattaggttgtgctgaaactggcagtggaaaaactgct
gcattcgccattcccatgatacagcattgcttggctcaacctcctgttcagcgcggtgat
ggaccactagctctggtattggctccgactagagagcttgcccaacaaattgaaaaagag
gtcaaagcttttagtgcatctctcgagtccttcagaactgcaattgtggtcggtggaacc
aacatatctgagcagaggtctgagctacgagcaggagttgatgtagtggttgccactcct
ggaaggtttatagatcatttacaacaaaggaacacttctctcactagaatttcttttgtt
gttctagatgaagctgatagaatgcttgacatgggatttgaaccgcagatacgagaggtg
atgcggaacctttctgaaaagcatcaaactttgctgttcagtgcaactatgcctgaagag
attgaagaattagctcaggaatacttaactaaaccagtgcaagtgaaggtgggaaaagtg
agtagccctacagcaaacgtaactcagactttggagaaggttcctgagagtgagaagact
gatcggcttttggctttgctcgtagaggaggcatctcgggttgaaggaactggccatccc
tttcccttaactattgtatttgttgaaaggaagacgagatgtgacgaagttgctgaagct
ttggtagcacaagggttgcatgcagttgctcttcatggtggtcgtactcaaactgaaaga
gaggctgctctacgtgattttagaaaaggcactaccagtattttggtcgccactgatgtt
gcatctcgtggtttggatgtctcaggagttgcacatgttatcaatttggatcttccaaag
agcatggaagattatgtgcaccggattggaagaacgggaagagcaggatcaatgggacaa
tctacttccttttacactgatcgtgatatgttcctcgtggcaaatataaagaaagcaata
tcagatgctggatctgggaatgctgtggcttttgcaactgggaagactgcaagaaggaaa
gagaaagaagcagcagctgctcaaaagcaagctagggttgccttatccaatagctcaaca
gcgggaccagcatcagtaaacatcgaggataagtatcggttcatgtttgctgattcgaac
aataaaaaagaaggtgcagcagatagtgcttgggacgattga
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