Malus sylvestris (European crab apple): 126590131
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Entry
126590131 CDS
T09027
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
126590131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126590131
03009 Ribosome biogenesis [BR:
msyl03009
]
126590131
04131 Membrane trafficking [BR:
msyl04131
]
126590131
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
msyl04147
]
126590131
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
126590131
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
126590131
Membrane trafficking [BR:
msyl04131
]
SNARE
SNARE associated proteins
Others
126590131
Autophagy
Aggrephagy
Other aggrephagy associated proteins
126590131
Exosome [BR:
msyl04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
126590131
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_33
AAA_2
AAA_5
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
AAA_17
Mg_chelatase
AAA_28
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
ABC_tran
Viral_helicase1
Vps4_C
AAA_7
NACHT
NB-ARC
AAA_24
TsaE
DUF815
Zeta_toxin
Sigma54_activat
AAA_lid_PRS2_C
Sigma54_activ_2
Rad17
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
126590131
NCBI-ProteinID:
XP_050111610
LinkDB
All DBs
Position
11:complement(12872267..12878109)
Genome browser
AA seq
804 aa
AA seq
DB search
MAHPAESSDSKKKDFSTAILERKKSPNRLVVDEALNDDNSVVSMHPETMEKLQLFRGDTI
LIKGKKRKDTICIALADDTCEEPRIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVHIL
PIDDSIEGVTGNLFDAFLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVA
PDTEIFCEGEPVKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPP
KGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAP
SIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDAALR
RFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERISKDTHGYVGADLAALCTEA
ALQCIREKMDVIDLEDESIDAEILNSMAVTNEHFQTALGTSNPSALRETVVEVPNVSWQD
IGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQAN
FISIKGPELLTMWFGESEANVREIFDKARSSAPCVLFFDELDSIATQRGSSSGDAGGAAD
RVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRFQIFK
SCLRKSPVSKDVDLRALARYTQGFSGADITEICQRSCKYAIRENIEKDIERERRRAENPD
SMDEDIDDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFKFTENT
QTGTTGSDAFATSAGAADEDDLYG
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggctcacccggccgaatcgtccgactcgaagaagaaggacttctcgacggcaattttg
gagcggaagaagtcgccgaaccgtctcgtcgttgatgaagctctaaacgacgataactcc
gtcgtttcaatgcatcccgaaaccatggaaaagctccagcttttccgcggtgacactatc
ctcatcaaggggaagaaacgaaaagacacaatctgcattgcacttgctgatgacacctgt
gaagagccaaggatcaggatgaacaaggttgtcaggtcaaatttaagggttcgacttgga
gatgttgtgtctgtacatcaatgccctgatgttaagtatgggaagcgtgttcacattttg
cctattgatgactctatcgaaggagttacaggaaatctctttgatgccttcttgaaacct
tacttcttggaagcttatcgccctgtgaggaaaggagatctgttccttgtcagaggagga
atgagaagtgtagagttcaaggtcattgaaactgacccaggagaatattgtgtggttgcc
cctgacacggagatcttctgtgagggggaacccgtgaaaagggaggatgaggaaaggttg
gatgaagttggttatgatgacgtgggtggtgttcggaagcagatggctcaaatccgtgaa
ctagtagagcttccactaaggcatccccaactcttcaaatcaattggtgttaaacctccg
aaaggaattctactttatggacccccgggatcaggaaagacattaatagccagagctgtt
gccaatgaaactggtgcttttttcttttgcattaacggaccagagattatgtcaaaattg
gctggagagagtgagagcaatctcagaaaggcatttgaagaagcggagaagaatgctcca
tccatcatctttatcgatgagattgactcaattgctcctaagcgggagaagacacatggt
gaagttgaaaggaggattgtctctcagcttttgactttgatggatggactgaaatctcga
gcccatgttatcgttattggtgctacaaatcgtccaaacagtattgacgcggctttgaga
aggtttggtaggtttgatagggagatagacattggtgttcctgatgaagtggggcgcctt
gaagttctccgcatacacacaaagaacatgaaactctctgatgatgttgatctagagagg
atttccaaggatactcatgggtatgttggtgccgaccttgctgctctctgcactgaagct
gctctgcaatgcattagggagaagatggatgtgatagacttggaagacgaatccattgat
gcggagatacttaattcaatggctgttacaaacgagcacttccagactgctcttggaaca
agcaatccatctgctttgcgtgaaacagttgtcgaagttcctaatgtcagttggcaggat
attggaggccttgagaatgttaagcgggagttacaagagaccgttcaatatcctgttgag
cacccggagaagtttgagaaatttggcatgtcaccttctaaaggagtacttttctacggg
cccccaggatgtgggaaaactcttttggccaaggcgattgcaaatgaatgtcaagctaac
ttcatcagtattaaaggccccgaactcctaaccatgtggtttggtgagagtgaagccaat
gtgcgagaaatctttgacaaggctcgatcatctgcaccgtgtgtccttttctttgatgag
cttgattccattgctacgcagaggggaagcagttctggggatgcaggtggtgctgctgat
cgtgttcttaaccaactcctgactgaaatggatggcatgtcagcaaaaaagactgttttc
attattggggccacaaaccgacctgacatcattgacccagcactcctacgccctggccgg
cttgaccaattgatttacattcctcttccagatgaagaatcacgtttccaaatatttaaa
tcctgcttgagaaaatcacctgtttcaaaggatgttgatctgagagcactggccagatat
acacagggctttagtggggccgatatcacagagatctgccagcggtcatgcaagtatgcc
ataagagagaatatagaaaaggatattgagcgggagagaaggagagcagagaatccagat
tctatggatgaggacattgacgatgaagtggcggagattaaagctgctcattttgaggag
tcgatgaaatatgctcgtaggagtgtcagcgatgctgatatacgcaaataccaggccttt
gctcagaccttgcagcagtccaggggtttcggaactgagtttaagtttactgaaaataca
caaactgggacaactggttctgatgcattcgcaacttctgctggtgcggctgatgaagac
gatttgtatggttag
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