Malus sylvestris (European crab apple): 126590761
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Entry
126590761 CDS
T09027
Name
(RefSeq) protein GAMETOPHYTE DEFECTIVE 1
KO
K03539
ribonuclease P/MRP protein subunit RPP1 [EC:
3.1.26.5
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
126590761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
msyl03009
]
126590761
03016 Transfer RNA biogenesis [BR:
msyl03016
]
126590761
03029 Mitochondrial biogenesis [BR:
msyl03029
]
126590761
Enzymes [BR:
msyl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
126590761
Ribosome biogenesis [BR:
msyl03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
126590761
Transfer RNA biogenesis [BR:
msyl03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
126590761
Mitochondrial biogenesis [BR:
msyl03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
126590761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_P_p30
Tash_PEST
Motif
Other DBs
NCBI-GeneID:
126590761
NCBI-ProteinID:
XP_050112221
LinkDB
All DBs
Position
11:10162315..10166255
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AA seq
654 aa
AA seq
DB search
MAFFDLSIPYTDPSPPDRSSATRAKLVTKALELGYSGIAYNRTMKGVMSDHDRCSIPLLK
LPSLLKHSPLLHSSVNFHRDLLGVPRSSPFRQYTRLTVCAETPAQSQALNSGNPVLKTYD
LVAVKPLNQSAFDLACEKLEVDIIAIDFSEKLPFRLKMPMVKAAMERGLYFEITYANIIA
DVQARKQIITNAKLLVDWTRGRNLIICSAAPTANEFRGPYDVANLMSLLGLSMERAKVSI
SRNCRTLVANAVRKKHFFKETIRVEVLSSDQETDKNKPWSGDAFQWDPISSGEGDLVLAD
LEKSFSTSSNKVSKTAKAIDFASVIDSMPSLGFQVKDLMCGNDVVVSQSMVTCKSIVSVS
EAVEQPAVTAGVPKQPDRASFPQSGQSSLCDSLVDQQMFDCENPQKLYSSCDTANACIGA
VEIKSPTLTSEAKPNNADGTDGNIDLILNEIHDLQSQKCVTNRELDVVPPNDNLTFQALD
IGLNAACTANSEVEVSTNYQESDIPAPHSEEALCVDRSDTQIDVMDEIVKSKEEKSLYLN
SSSLHISEKDQFRESGDDIVVLANQVPVLESNDDMAAPAMDDYLVARHGSMEVTMEENEN
GKVDTEINHPDSVQSISGKSRPKRKTPHQVKFLPLKRLLHIVPFKKVRRNKKKN
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atggccttcttcgacctcagcataccctatacggacccctccccaccggaccgatcatca
gcaacacgtgccaagctggtgaccaaggccctggagctcggctactccggaatcgcttac
aaccgcacgatgaagggcgtcatgtccgatcacgaccgttgctccatccccctcctcaaa
cttccttccctcctcaagcactctcctctcctccactcctccgtcaacttccaccgcgac
ctcctcggtgtcccccgctcctcccctttccgccagtacacccgcctcaccgtctgcgcc
gagacccctgcccagtcccaggcccttaattccggtaacccggttctgaagacttacgat
ttggtcgccgtcaagcccttgaatcagtccgccttcgacctcgcctgtgagaaattggag
gtggatataattgcgattgatttctcggagaagttgccgtttcgattgaagatgcccatg
gttaaagctgcaatggagcgcggattgtattttgagatcacatatgcgaatatcattgcc
gatgttcaagccagaaagcaaataataaccaatgctaagttactggtagattggactcga
ggaaggaatctaataatttgcagtgctgccccgactgcaaatgaatttagggggccatat
gatgttgcaaacttaatgtcattactggggctctctatggagcgagctaaagtgtctata
tcaagaaattgtaggactctagtagctaatgctgtgagaaaaaaacactttttcaaggaa
accataagagttgaagttctgtcatcagatcaagaaactgacaagaacaaaccttggtct
ggtgacgcgtttcaatgggatcccatctctagtggtgaaggtgatttggtattagctgat
ttggaaaagtctttcagtacctctagtaacaaagtatccaaaactgctaaagccattgat
tttgcttcggtcattgacagcatgccatcacttgggtttcaagtcaaggatctgatgtgt
ggcaatgatgtggttgtctctcaatcaatggttacttgtaaaagcatcgtttctgtttct
gaggcagttgagcaaccagctgtgactgctggagtgccaaaacaacctgatagggcttct
tttcctcaatcaggtcaatcttctttgtgtgatagtcttgtggaccaacaaatgtttgac
tgtgaaaatcctcagaaattatattcctcttgtgataccgcgaatgcttgtattggtgct
gtggaaattaaatctcctacattaacttctgaagcaaaaccaaacaatgcagatggtaca
gatgggaatattgatttgattttgaacgaaattcatgatttgcaatcacagaagtgcgtg
actaatcgtgaattggatgttgtgccacctaatgataatttaacatttcaagcattagac
attggattaaatgctgcttgtactgctaattctgaagttgaagtttccacaaattaccag
gaatcagatattcctgctcctcacagtgaagaggctttgtgtgtggatcgttctgataca
caaattgatgtgatggatgaaattgtgaagagtaaagaagaaaaatctctgtatttgaat
tcatcatcactgcatatttcagaaaaggatcaattcagggaatctggagatgatatagtt
gtacttgcaaatcaggttcctgttctggagtccaatgatgatatggcagcacctgcaatg
gatgattatttagttgcaaggcatgggtcaatggaagtgactatggaagagaacgaaaat
gggaaagttgatactgaaattaaccatccagactcggttcaatctatatcagggaaatcc
agaccaaaaaggaagactcctcatcaagtgaagtttcttcctcttaagcgattgttgcat
attgtacctttcaagaaagtgcggagaaataagaagaaaaattaa
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