KEGG   Malus sylvestris (European crab apple): 126591358
Entry
126591358         CDS       T09027                                 
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
msyl  Malus sylvestris (European crab apple)
Pathway
msyl03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:msyl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    126591358
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:msyl03019]
    126591358
Messenger RNA biogenesis [BR:msyl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     126591358
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     126591358
SSDB
Motif
Pfam: Ge1_WD40 EDC4_C WD40_WDHD1_1st WD40 WD40_CDC20-Fz PEP5_VPS11_N WD40_Prp19 WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR75_2nd Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_EML_2 HAM1_C
Other DBs
NCBI-GeneID: 126591358
NCBI-ProteinID: XP_050112977
LinkDB
Position
11:3532933..3540604
AA seq 1389 aa
MAATGNQNPPPQQQPPPFDMQKFFKPTSPSPLTPQTSTPAHSNQNPNPNLSSSSFPIPPA
SFPPPTGPYSYPPQTAPFHLHQFQYHPHPQQPHPQMPYSPQDHHLLHQRSLSFPTPPLQP
PSNYNIATPASNPNSTGGSNSNSSPNSGARIMALLGAPSGNLEPELSTPTGVSMVPALPM
GIPSTGPTRMPSNKLPKGRHLIGDNVVYDVDVRLQGEVQPQLEVTPITKYGSDPQLVLGR
QIAVNKSYICYGLKQGNIRVLNIHTALRSLFRAHTQRVTDMAFFAEDVHLLASVSVEGRL
FVWKISEGPDEEGTPQITGKVVIAIHIVGEGEAVHPRVCWHCHKQEVLVVGFGKRVLRID
TTKVVKGEAPSADEPFKCPVEKLIDGVQFVGKHDGEVTDLSMCQWMTTRLVSASMDGTIK
IWEDRKAQPLLVLRPYDGQPVYSATFVTAPHRPDHIILITVGPLNREVKIWSSASEEGWL
LPSDAESWKCTQTLELKSSSEPRVEEAFFNQVIALSQAGLLLLANAKKNAIYAVHLEFGS
DPASTRMDYIAEFTVTMPILSFTGTSISSHGEQIVQVYCVQTLAIQQYALELLKCLPPPL
DNVGLEKSDSNISRDAIGAEGYLSGSKPTEALLANSSPKPAVQESSSEGAAANTEPRLVS
FASATSDSDAVFVATPPITLSPKLSGKFSGIRSPADISEAGRTLNDHGGDQQVNDYSVDR
QMDPAHLNMSDVPAVDDDSRNDEPKVGQDDLSSVLNPPIMFKHPTHLITPSEILMAASSS
EAATIDSKSEGEGNIQDVLVNSDVGNSEVEMKVVGETRSTQIDEFGSQGEPQNAVSENKE
KYFCSQASDLGIEMARECCALPAENYVTDEGRQVDDASVTEPPGQSHAGDEDQDSAKDVS
ASSTPPTVLQSQTSNTKVKKQKWKNSQASGSSFPSATVLNSIDSTNENGVSSSLPSSEAA
HPQIMAMQDTVNQLLTMQKEMQKQMTMMVAGPVTKEGRRLEAALGRSMEKTVKANNDALW
ARFQEENAKNEKLLRDRNQQITSLINNFINKEFPVMLEKVVKKELSVIGPAVVRAITPAI
EKAIPLAISDSFQRGVGDKAVNQLDKSVNSKLEATVSRQIQAQFQTSGKQALQDALKSSM
EASVVPAFEKSCKAMFEQVDATFQKGMVEHTTAAQQHFDSAHSPLALALREAINSASSVT
QTLSGEVADGQRKLIALAAARGNSSAVNPMVTQLTNGPLGGLHEKVEVPLDPKNELSRLV
SERKYEEAFTVALQRSDVTIVSWLCHQVDLRGILLSNPVPLSQGVLLSLLQQLACDISND
TPRKVAWMTDVAGAINPANQMIAMHVRPIFEQVYNILHHQHALPTVSSAEHTSIRLLMHV
INSMMMACK
NT seq 4170 nt   +upstreamnt  +downstreamnt
atggctgccaccgggaatcaaaatccgccgccgcagcagcaaccgccgcccttcgacatg
cagaaattctttaaacccacaagcccatctcctctcaccccccaaacctcaacccccgcc
cattcaaaccaaaaccctaaccctaatttgagttcctcctcgttcccaatcccgccggct
tctttccctcctcccacggggccctactcgtacccgccccaaacggcaccgtttcacctc
catcagtttcaataccacccccacccgcagcagccccacccccaaatgccttactctccg
caagaccaccacttgctccaccagaggtctctctcgtttcccaccccgcccctccaaccc
ccttctaattacaacattgccactcccgcttccaaccccaacagcaccggcggtagcaat
tccaattcgagcccgaattctggtgctcgaatcatggcgcttcttggtgctccttcggga
aatctagagcctgagttgtcgactcctacaggtgtctcaatggtgcccgctctccctatg
gggattccatccactggcccgactcgaatgcccagcaataagctgccgaaaggccggcat
ttgattggcgataacgtggtttatgatgtggacgttaggttgcagggtgaggttcagcca
cagctcgaagttacgcccataaccaagtatggttcggatcctcagcttgtgcttggccgc
caaattgcggttaataagtcgtatatatgctatggattgaagcaggggaacattcgggtg
ttgaatatacacactgcattgagatctttgtttcgagctcatacgcagagggtcacagac
atggctttctttgctgaggatgttcaccttttggctagtgtaagtgtagaaggacgactc
tttgtatggaagatttctgaaggtccagatgaagaaggtacgccacaaatcactggaaag
gttgtcattgctattcacatagttggagagggggaagctgttcatccacgagtttgttgg
cactgtcataaacaagaggttttggtagttgggtttggaaagcgtgtactaagaattgat
actactaaagttgtgaagggtgaagctccttctgctgatgagcctttcaaatgtcccgtt
gaaaagctgattgatggagtccagtttgtcggtaaacatgatggagaagtgaccgatttg
tcaatgtgccaatggatgaccacccgtctggtttctgcttctatggatggaacaataaag
atctgggaagatcgcaaggctcaacctcttttagtattgagaccctatgacggccaacct
gtttattcagctacatttgtgacagctccccacaggccagatcatattatacttatcaca
gtggggccacttaatcgggaagtgaagatctggtcctcagcgagtgaagaaggctggctg
cttcccagtgatgctgaatcatggaaatgtacccagacattagagttgaagagttcttct
gaaccccgagtcgaggaggcattctttaatcaagtcatagcattgtcacaagctggcctt
ctcttacttgcaaatgctaagaagaatgctatatatgctgtacacttagaatttggttct
gatccagcatcaacccgcatggattacattgcagaatttactgttaccatgcctattttg
agttttacagggacaagtatatcttctcatggtgaacagattgttcaggtttattgtgtc
cagacactggccattcagcagtatgctttggaattattaaagtgcttgcctccaccactg
gataatgtgggattagaaaagtcagattccaatatctcacgcgatgcaattggggctgaa
ggatatctatctggaagtaaacccacagaggcactgctagcgaattcatcacctaaacca
gccgtacaagaaagtagttctgagggtgcagctgcaaatacagaacccagacttgtttca
tttgcatcggcaactagtgactctgatgctgtttttgttgcaacaccacctattactttg
agtcctaagttgtctgggaaattttctggtataagaagtccagcagatatctctgaggca
ggtcgcacacttaatgaccatggtggagaccaacaagtcaatgattactcagttgacagg
caaatggaccctgctcatttaaacatgtcggatgtgcctgcagtggatgatgactcgagg
aatgatgaacctaaagttggacaagatgatttatctagtgtgctcaatcctcctatcatg
ttcaaacatccaacccatctaataactccctctgagattttaatggctgcttcatcttct
gaagctgctactattgacagcaagagtgagggggagggaaatatccaagatgttcttgtt
aacagtgatgtaggtaattctgaggtggagatgaaagtagtgggtgaaacgagatctact
caaattgatgagtttggctctcaaggagaaccacaaaatgctgtctcagaaaataaagaa
aaatacttttgctcccaggcatcagatcttggaattgaaatggcccgagaatgctgtgcg
ctaccagcagaaaattatgtaacggatgaaggtcggcaagttgatgatgccagcgtaaca
gaaccaccaggccagtctcatgctggagacgaagaccaggactctgcaaaagatgtttct
gcgtcatctacccccccaacagttttgcaatcgcagacatcaaatacaaaagtgaaaaaa
cagaagtggaaaaattcacaagcatcaggttcatcgttcccatcagcaactgtgctcaat
tcaatagattccaccaatgaaaatggtgtcagttcaagcctaccctcttcagaagctgca
caccctcaaattatggccatgcaggatacggttaatcagctactgaccatgcagaaagaa
atgcaaaagcagatgacaatgatggttgcaggccctgttacaaaggaagggaggagattg
gaagctgctcttgggcgaagtatggagaagactgtgaaggccaataatgacgctctatgg
gctcgttttcaagaagagaatgcaaagaacgagaagttattgcgagaccgtaatcagcaa
ataaccagtttgatcaataacttcataaacaaggaattcccagtcatgttggagaaagtg
gtgaagaaggaattatctgtgattggaccagctgttgttcgtgctataactccagcgatt
gagaaggccatacctttggctatttctgattccttccagagaggagtgggtgacaaggct
gttaatcaattggataaatctgttaactcaaaacttgaagctactgtttccaggcaaatt
caggcgcagtttcaaacttctggcaaacaagctcttcaggatgctctcaagtccagtatg
gaagcttcggtagtacctgcctttgagaagtcatgtaaggccatgtttgagcaagtagat
gctacgttccagaaaggaatggttgaacacacaactgcggcccagcagcactttgactcc
gcacattcaccattggcactggctctaagggaagctattaattctgcatcatcggtgact
caaaccttaagcggagaagtggctgatggtcaacgtaagctcatagctcttgcagctgca
cggggaaactcaagtgcagtaaatcctatggtcacacaactcactaatggacctttgggt
ggtctccacgagaaggttgaggtgcctttggatccaaagaatgagctatcgaggctggta
tctgaacgcaagtacgaggaggctttcacagtggctctgcaaagaagtgatgtgaccatc
gtatcgtggttgtgccatcaggttgatctgcgtgggatattgctgtcgaatcctgttccc
ctgagccaaggtgtgcttctttctcttttgcaacaactggcgtgtgatatcagcaatgat
acacccagaaaagttgcgtggatgacggatgtggcgggcgccataaacccggctaaccaa
atgattgcgatgcacgtacggcctatatttgagcaagtttacaatatactgcaccatcaa
catgccttgcctacggtctctagtgccgaacacacaagtatccgacttctcatgcatgtc
atcaactccatgatgatggcctgtaagtga

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