Malus sylvestris (European crab apple): 126592399
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Entry
126592399 CDS
T09027
Name
(RefSeq) uncharacterized protein LOC126592399 isoform X1
KO
K12607
CCR4-NOT transcription complex subunit 10
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126592399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126592399
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126592399
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_2
TPR_14
TPR_1
TPR_12
TPR_11
ARM_TT21
TPR_19
TPR_8
TPR_10
ARM_TT21_N
SRP_TPR_like
ANAPC3
Motif
Other DBs
NCBI-GeneID:
126592399
NCBI-ProteinID:
XP_050114048
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Position
2:complement(1778295..1809635)
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AA seq
831 aa
AA seq
DB search
MASPSSSSSTVANRDGSASAAEDEAIKSETRAFAQEALLQFQSGKFDQCLAALSECLKRK
PNDPKIFHNIGLAEFYRDGCSDPKRLLDVLNDVKKRSEELARTSAEQVESGSNTGDKVAL
GSKGSGTMGHPLSAVYMDEFDTYVATLNIAVIWFHLHEYAKALSVVEPLFQNRGPIDEKT
ALNMCLLLLDVGLACHDAMKSADVLIYLEKSFGVSSMNQGDGGSTASQQPANPVAKPPSL
STNSPAADGPTLDSDSNALESEETSEYDNVVFDMDVAQPTGLLSSNDISRNPVHMSASSV
YLKLKMQLYKIQFLLLTRNLKQAKREVKNAMNIARGRDSSMALLLKSQLEYARGNYRKAI
KLLMASNNRTDTRISSMINNNLGCIYYQLGKYHTSSVFFSSALRDCSSLRKDRPLNLSTF
SQDNSFLIVYNCGMQYLACEKPLLAARCFQKAGLVFYNRPLLWLRFAECCLMALEKGLMK
TNLASSEVRVYVIGNGKWRQLVMEDGVSKNGNLGSFERGDLFLGSDRQPKLSLSLARQCL
SNSLYLLNRSESSYCKNSLPSNFFLDDNELGEAAVSKNSNHKNFHSMDSEASALSVGFGQ
VSINGDGKEQKAGTTQELVQNSLSYYADVRNKENLLIKQALLANLAYVELELENPMKALS
IARSLLELPECSRIYIFLGHVYAAEALCLLNRPKDAADHLMTYLSGGNDVELPFSEEDCE
QLQGIRAVDYEESNGGSMAAKNSSENRLGIVFLKPEEARANLYVNFAALYAMQGELDQAC
QFVAQALSITPNSPEATLTAVYVDLKLGHSQEALAKLKQCGRITFVPSGLT
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaccttcgtcttcgtcatcaacggttgccaatcgggacggttctgcttcagct
gccgaggatgaagccatcaagtccgagacccgagcttttgcgcaggaagcgttgctgcaa
ttccagtcgggcaagttcgatcagtgccttgccgccttgtctgagtgcctcaagaggaag
ccaaacgatcccaaaatatttcataatatcggacttgcggagttctatcgggatggttgt
tcagatcctaaaaggttgcttgatgtgcttaatgatgtcaagaagcgaagtgaagagctt
gctcgaacatctgcagaacaggtggagtctggcagcaatactggagataaagttgcatta
gggtccaaaggaagtggtacaatgggacatcccctttctgctgtttacatggatgaattt
gacacttatgttgccaccttaaacattgcggttatctggttccatcttcacgaatatgca
aaggcattatctgttgtggaaccgctttttcaaaatagaggacctatagatgagaaaact
gctcttaatatgtgccttttgttgctggatgttgggctggcttgccatgatgcaatgaag
tctgctgatgttttgatttatctggaaaaatcttttggtgtgagttctatgaatcaagga
gacggtggaagcactgcttcgcaacaacctgcaaacccagttgcaaagcctccatctctt
tctaccaattcaccagccgcagatggtcctactttagattcagattcaaatgctttggag
tctgaggagactagcgagtatgataatgtggtttttgacatggatgttgcacagccaact
ggtctcttatcttcaaacgatatttctaggaacccagttcacatgtctgcctcttctgtt
tacctgaagcttaagatgcaactttacaagattcagtttctgcttctcactaggaactta
aagcaagctaaacgtgaagtgaagaatgctatgaatattgcacgtgggagagattcttct
atggctctccttttgaagtcccagcttgaatatgctcgtggtaattatcgtaaagccatc
aagttgttgatggcatctaataatcgaacagacacaaggatatcgagcatgatcaacaat
aatctaggctgcatttattaccagcttgggaaatatcacacatcatcagtattcttctcc
agtgcattgcgtgattgctcatctctccggaaggatcggcctctaaatctgtcaactttt
tcacaggacaattccttcttaatcgtatataactgtggtatgcagtacttggcttgtgag
aaaccactacttgctgcacgttgttttcagaaggctggtttagttttctataatcgacct
ctgctgtggcttcgatttgctgagtgctgtctgatggctttggagaagggattaatgaaa
accaatttggcatcatcagaagttagagtttatgtcattggcaacggaaagtggaggcaa
cttgtaatggaagatggggtttcgaagaatggaaacttgggttcttttgaaagaggtgat
ttatttttgggcagtgatcggcagcctaagctctccttgtcccttgcccggcagtgtctc
tcgaattccctgtacttactgaaccgttctgagtcaagctattgtaagaattctttgccc
tctaatttcttcttagacgataatgaattaggggaagcggcagtttccaagaattcaaac
cacaagaattttcacagtatggattccgaggcatctgcgctatctgtaggctttggtcag
gttagcataaatggggacggaaaagagcaaaaggcgggaactactcaggagcttgtgcag
aactccctttcatattatgctgatgttcgtaacaaggaaaatttgttgatcaaacaagct
cttttggcaaatctggcatatgtagaactagaattggaaaatcccatgaaggcattgtca
attgcaagatctctcttggaacttccagaatgttcgagaatttacatctttctaggtcat
gtgtatgctgcagaggctctgtgcttactaaacaggccaaaggatgctgctgaccatttg
atgacatatttgtcaggaggtaatgacgtcgaattaccattcagtgaagaggactgtgaa
caactgcaagggatcagggctgttgattatgaagagtcgaacggaggttcaatggctgcc
aaaaactcatctgaaaacagattaggtattgtgttcctcaagccagaagaagcacgggca
aacctgtacgtaaattttgctgccctgtacgctatgcaaggtgaacttgatcaggcttgc
cagtttgttgcacaggcattgtccataacacccaacagtccagaagcaactttgactgca
gtgtatgtggatctcaagctcggtcactcacaagaagctcttgccaagttaaaacagtgt
ggtcgaatcactttcgtacctagcggattgacatga
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