Malus sylvestris (European crab apple): 126592571
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Entry
126592571 CDS
T09027
Name
(RefSeq) serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X1
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126592571
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
msyl01009
]
126592571
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126592571
03036 Chromosome and associated proteins [BR:
msyl03036
]
126592571
Protein phosphatases and associated proteins [BR:
msyl01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
126592571
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
126592571
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
126592571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_8
EF-hand_5
P2R3B_EF-hand
2-oxogl_dehyd_N
wHTH-Calcineurin_assc
DUF4187
Motif
Other DBs
NCBI-GeneID:
126592571
NCBI-ProteinID:
XP_050114268
LinkDB
All DBs
Position
12:31314194..31336375
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AA seq
539 aa
AA seq
DB search
MTMEIVVDAASFDAELLQLNEVSPLALKSNPSYVESLFEQWLSLPDTNRLVTQLLTEAKA
GRPLNVQGNSSSPHAIAGSTLPSMFPAGSAPPLSPRSSSGSPRVMKQRIGPSHLGSPLKL
VSEPVKEVIPQFYFLNGRPPPNELKDQCLFRINQFFSGNSDGLQIHEFKSVAKDICKLPS
FFSTSLFRKIDANSTGFVTRETFIDYWVGGNMLTMDVATQIYSILKQPDLKYLTQDDFKP
VLRELLATHPGLEFLQSTHEFQERYAETVIYRIFYYINRSGNGHLTLRELKRGNLIDAMQ
HADEEEDINKVLRYFSYEHFYVIYCKFWELDTDHDFLIDKENLIRYGNHALTYRIVDRIF
SQVARKFTSKVEGKMGYQDFVNFILSEEDKSSPPSLEFWFKCIDLDGNGILTRNELQFFY
EEQLHRMECMAQEPVLFEDILCQIIDMIGPENDSYITLHDLKGCKLSGSVFNILFNLNKF
MAFETRDPFLIRQERENPTLTEWDRFAHREYIRLSMEEDVEDASNGSAEVWDESLEAPF
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgactatggaaatcgtggtggatgcggcgtcgtttgacgccgagctgttgcagctcaat
gaggtgtcccctttggccctcaaatcgaatccgagctacgtcgagtcgctattcgagcag
tggctttcgcttcccgatactaatcgcctggtgacacaactgctaactgaagcaaaggca
ggtaggcccctgaatgttcagggaaattcttctagtccacatgccattgcaggcagtact
ttgccttctatgtttccagcaggcagtgcaccaccactgtcaccaagaagttcatctgga
tcccctcgcgttatgaaacagaggattggtccttctcatttaggttctcccctgaaatta
gttagcgaaccagttaaagaagtgatacctcagttttactttctaaatggtcgcccgcct
ccaaatgaactaaaagatcaatgcttatttagaatcaatcagtttttctctggcaactca
gacggactgcagattcatgaatttaaatcagttgctaaggatatctgcaagctgccctca
ttcttctccacatctcttttcagaaagattgatgctaacagcactggatttgtaacaagg
gaaacatttattgattattgggttggtggaaacatgttgacgatggatgtagctactcag
atctattcgatcttaaagcaaccagatctcaaatacctcactcaggatgactttaaacct
gtccttcgagaacttttggcaactcatccagggttggagttcttacagagcacgcatgag
tttcaggaaagatatgctgaaactgtaatatacagaatattttactacataaatagatct
gggaacggtcatctcacactcagggagttaaagcgtggaaacttgatcgatgcaatgcaa
catgcagatgaagaagaggacatcaacaaggttttgaggtacttctcttatgagcacttt
tatgtgatatactgcaagttttgggagctggatacagatcatgattttctgatcgataaa
gagaacctgatcagatatggtaaccatgcacttacctaccggattgttgacagaatattt
tcccaggtcgcaagaaagtttactagcaaggttgaaggaaagatgggatatcaagatttt
gtcaacttcattctctcagaggaggataaatcttctccgcctagccttgagttctggttc
aagtgcatagatttggatggaaatggaattttgacgcggaatgaactgcagttcttttat
gaggagcaattgcatagaatggaatgcatggcccaagaacctgttctgtttgaggatatt
ttgtgccagataattgacatgattggaccagagaatgatagctacatcacactccatgat
ctgaaaggctgtaagctttcaggaagtgttttcaatatccttttcaaccttaacaagttc
atggccttcgaaactcgtgatccatttctcattcgtcaggaacgtgagaatccaaccttg
acagagtgggatcgatttgcacatagagaatacatcagactttcaatggaagaagatgtt
gaagatgcctccaatggaagtgccgaagtttgggacgaatcactagaggctcccttttga
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