Malus sylvestris (European crab apple): 126592981
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Entry
126592981 CDS
T09027
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
msyl
Malus sylvestris (European crab apple)
Pathway
msyl00040
Pentose and glucuronate interconversions
msyl01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
126592981
Enzymes [BR:
msyl01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
126592981
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Tir_receptor_C
Motif
Other DBs
NCBI-GeneID:
126592981
NCBI-ProteinID:
XP_050114775
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Position
12:19716815..19719794
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AA seq
382 aa
AA seq
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MGNSHGHHRKRRNGPGSSETANSGFKYGPSDQAAQIPSSSSTSAKKTSSSMVVALPYAHV
DSSLRALSAQAEGFGRLAIGGLHGAVYHVTTLADDGPGSLREGCRQKEPLWIVFEISGTI
HLQSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDVDGIQIKPNS
KHIWIDRCSLRDYEDGLIDITRGSTDITISRCHFSQHDKTMLIGSDPSHIDDRCIRVTIH
HCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSECNIYEAGQKKVAFKY
LTEKAADKETPMTGHIKSEGDLFVTGTQAGLSPDGGEHCVFHPTQHYQTWTKGPPVDDLK
HVLQHCAGWQCVPRPADQGLAK
NT seq
1149 nt
NT seq
+upstream
nt +downstream
nt
atgggcaactcccacggccaccaccgtaaacgccgtaacggccccgggtccagtgaaacg
gccaattcgggctttaaatatggtccgtcggatcaagcggctcaaatccctagctctagc
tcaacgtcagctaagaagaccagcagcagcatggtggtcgccttgccgtacgctcacgtc
gactcgagcttgcgcgccctctccgcccaggccgagggcttcggccggctcgcaatcggc
ggcctccacggcgccgtttaccacgtcaccactctagcagatgatggtccgggttcactt
agggaaggatgtcgtcagaaagaaccgctttggattgtcttcgaaatttcaggcactatc
catctccaatcttacttgaacgtgtcatcgtataagactatagatgggcgtggtcagagg
attaaacttacagggaaggggttgaggttgaaggaatgtgaacatgtcattgtgtgcaat
ttagagtttgaaggtggtagagggccagatgttgatggcattcaaataaaacccaattct
aaacacatatggatagatcgctgcagccttcgtgattatgaagacggacttatcgatatc
accagaggaagcactgatattacaatttccaggtgtcatttttcacagcatgataagaca
atgctgattggctcagatccctctcatattgatgacagatgcatccgggttaccattcac
cactgtttctttgatgggaccagacagaggcatcctcgtgttagatttgcaaaagtacat
ctatataacaattacacccgaaactggggcatatatgctgtttgtgctagtgtagaatcg
cagatattctcggaatgcaatatatatgaagcaggacagaaaaaagtggcatttaagtac
cttacggagaaggcagcggacaaggagacgccaatgactggccacattaagtccgaaggc
gacttatttgtaacgggaactcaagcaggattatcccccgatggcggtgaacattgcgtg
tttcatcctacccagcactatcagacatggacaaaaggaccgcccgtggacgatcttaag
catgttctccaacattgcgcaggatggcagtgtgttccgcggccagctgatcaaggatta
gcgaagtag
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