Malus sylvestris (European crab apple): 126593126
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Entry
126593126 CDS
T09027
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
msyl
Malus sylvestris (European crab apple)
Brite
KEGG Orthology (KO) [BR:
msyl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
msyl03019
]
126593126
03041 Spliceosome [BR:
msyl03041
]
126593126
03036 Chromosome and associated proteins [BR:
msyl03036
]
126593126
Enzymes [BR:
msyl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126593126
Messenger RNA biogenesis [BR:
msyl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
126593126
mRNA cycle factors
Common to processing body (P body) and stress granule
126593126
Spliceosome [BR:
msyl03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
126593126
Chromosome and associated proteins [BR:
msyl03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
126593126
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
126593126
NCBI-ProteinID:
XP_050114978
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All DBs
Position
2:complement(2653255..2656783)
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AA seq
624 aa
AA seq
DB search
MTMPWSDSFTESTRNPTRRTLPKYIPRHLRNSEGGGGSYGYGYAPPTESAQYGFRQSYAG
GPGRQAGRNGPGRGGGGRGRGRGGARFWAQTPPNPTPDPNPFDNVSEEFDQLKVTEDEGD
GNGGINFDAYEDIPVEASGEDIPPPVDTFVEIDLAECLNENIKRCKYVKPTPIQRHAIPI
AMAGRDLMACAQTGSGKTAAFCFPIISGVLNNGVGLSPARGVDRGVCPSALILSPTRELA
GQIHEEAKKFGYQSGVKIVVAYGGAPISQQLRILDRGCDILVATPGRLVDMIERSRVSLS
NIKYLALDEADRMLDMGFEPQIRRIVEQMDMPRSGARQTLLFSATFPDEIQRLAADFLSN
YIFLSVGRVGSSTGLITQRVELVEDMDKRNHLMKLLSQQANGAHGKVALTLVFVETKRSA
DSLENWLRMNRFPAIAIHGDKVQMEREQALRLFKCGKTPILVATDVASRGLDIPHVSHVI
NFDLPKSIDDYVHRIGRTGRAGNSGLATAFFNAKNQPLAKGLIELMQESNQEVPSWLNEY
AEGESQTYSSGGGGGGRNRRSGGSKFGGYDYRRDSQYAHDGYYGPSSYGYGDYSGGMSAA
PYNDAAAVPNGYGNYETIVAGGWD
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgccttggtccgattccttcaccgagtcaactcggaacccgactcgccgaact
ctgcccaaatatatacctcggcatctccgaaacagtgaaggcggcggcgggtcgtacggt
tacggctacgcgcccccaaccgagtcggcccagtacggctttcggcaaagctacgctggt
ggtccaggaaggcaagccggccggaacggtccgggtcgcggtggcggaggacgaggtcgc
ggacgtggtggcgctcgcttttgggctcaaacgcccccaaacccgaccccagacccaaac
ccgtttgataatgtctctgaggaatttgatcagctcaaagtcactgaggacgaaggcgat
ggaaatggcggtatcaatttcgacgcctacgaagacatcccggtggaggcgagcggcgag
gacattccgccgccggtggacacgtttgtcgagatcgatttggccgaatgcttgaacgaa
aacatcaagcggtgcaagtacgtgaagcccacgccgattcagcgccacgctattccgata
gccatggctggccgcgacttgatggcctgtgctcagactgggtccggcaaaacggctgcg
ttttgcttccccattatcagtggggtcttgaacaacggtgtggggttgtcgccggctcgc
ggcgtggatcgcggcgtgtgcccctccgccctcattttgtctccgacgagagagctggct
ggtcagattcatgaggaagctaagaaatttggttatcagagtggggtgaagattgttgtt
gcttatggtggagctccaatttctcagcagttacgtattctggatagaggttgtgatatc
cttgttgcaactcccggtcgcttggtggacatgattgagaggtcacgagtttcgctgagt
aatatcaagtatttggcattagatgaggctgataggatgttggacatgggttttgagcct
cagataaggaggattgtcgaacaaatggacatgcctcgctctggtgcaagacaaacgttg
cttttcagtgctacgttccctgatgaaatacagaggctcgctgcagattttctgtcaaac
tacatttttctatctgttggaagagttggatcaagcacaggactcattacacaaagagtt
gaactcgttgaggatatggacaaaagaaaccatttgatgaagctgcttagccagcaggca
aatggagctcatggaaaggttgctttaaccttggtgtttgtggagaccaagagaagtgca
gattctttagaaaactggttacgcatgaatcgttttccagctatagctatacatggtgat
aaagtgcaaatggagagggagcaagctttgagattgttcaagtgtggcaagaccccaata
ttggtggcgacagatgttgcttcacgagggctagacatccctcatgtttcccatgtcatc
aactttgatctgccaaaaagcatagatgactacgttcaccggattggacgaacagggcgt
gctggaaattcaggtcttgcaactgctttcttcaatgccaaaaaccagccactcgccaag
ggactgatcgaactgatgcaggagtcaaaccaggaggttccaagctggctgaacgaatat
gctgagggcgaatcacagacatacagcagtggtggtggtggtggtggccggaacaggagg
tctggtggcagtaagtttggtggatatgactatcgtagggactctcaatatgcgcatgac
ggttattacggtccaagcagctatggctatggagattattctgggggcatgtctgctgct
ccctataacgatgctgctgctgttccaaacggctacggaaactatgaaactattgttgct
ggtgggtgggattag
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